Browse Element(s) Details


Os.52165.1.S1_at

Description gb:AK065399.1
DB_XREF= gi:32975417
TID=Os.52165.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52165 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013009A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013009A03, full insert sequence.
FL= gb:AK065399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g225701/11Cellulase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22540NANA10+11347200..11350424retrotransposon protein, putative, unclassified
LOC_Os10g22550NANA10+11351044..11356798retrotransposon protein, putative, unclassified
LOC_Os10g22560Os.46546.2.S1_x_at11/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22560Os.46546.1.S1_at10/1110+11359758..11363655POT family protein, expressed
LOC_Os10g22570Os.26719.1.S1_at11/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22570Os.52165.1.S1_at1/1110+11367609..11382174Cellulase containing protein, expressed
LOC_Os10g22580OsAffx.30500.1.S1_at11/1110+11385169..11386483hypothetical protein
LOC_Os10g22580Os.57008.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22580OsAffx.32015.1.S1_at1/1110+11385169..11386483hypothetical protein
LOC_Os10g22590Os.5297.1.S1_at11/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22590Os.3577.1.S1_x_at2/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22600OsAffx.20436.1.S1_x_at11/1110+11400208..11401173AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52165.1.S1_at--987--8871Chr08:2883365..2883389 (25 bp)
TGATGGCTGCTATCCACTACTGTAC
NONE
Os.52165.1.S1_at--24--2031Chr08:2883350..2883374 (25 bp)
ACTACTGTACTTGCTTCGGCACTCA
NONE
Os.52165.1.S1_at--1007--10011Chr08:2883318..2883342 (25 bp)
TAGAGAAACTTTCCCTGCATCTTGT
NONE
Os.52165.1.S1_at--855--591Chr08:2883194..2883218 (25 bp)
ATGCCTATGATCACGACACCAATTC
NONE
Os.52165.1.S1_at--442--4851Chr08:2883162..2883186 (25 bp)
GCTACTGCAGATTTAGATCCCACAT
NONE
Os.52165.1.S1_at--1070--151Chr08:2883037..2883061 (25 bp)
ATTTTCCATTATTAATCCTCTCCCT
NONE
Os.52165.1.S1_at--132--10531Chr08:2882963..2882987 (25 bp)
TTCAGCATTTGCACACTCAAGTCTG
NONE
Os.52165.1.S1_at--342--10311Chr08:2882904..2882928 (25 bp)
TTTCTTTTACAACCTAGGCCACCAG
NONE
Os.52165.1.S1_at--299--10071Chr08:2882890..2882914 (25 bp)
TAGGCCACCAGTTACGTTATTGAAG
NONE
Os.52165.1.S1_at--426--8652Chr10:11373771..11373880 (24 bp)
TGGGCAAGTTGTTATTTCTCCTTTT
LOC_Os10g22570
Os.52165.1.S1_at--913--9231Chr08:2882752..2882776 (25 bp)
TCCTTTTGATGACTCTATTTGGGCA
NONE
Target Sequence 
TGATGGCTGCTATCCACTACTGTACTTGCTTCGGCACTCACCTAACATAGAGAAACTTTCCCTGCATCTTGTCAAGCATG
GAGCTTATGCCTATGATCACGACACCAATTCTGCAAATGCTACTGCAGATTTAGATCCCACATGCGAAGGAACAGGGACA
GCAGTTAACTGTGAAAAGCTTAGGAAAATCAAAATCATTTGCCCACAAGGCGATAGAAGAGTCCACATCATTGTGAAGAT
CTTATTTTCCATTATTAATCCTCTCCCTCAAATCAAAATCCATCCCCAAAATGGCTGAGAATGTTGAGCATCTTAATTTC
AGCATTTGCACACTCAAGTCTGTTGAATTGGAATTCCATGACTCATATTTCAATGTTTTCTTTTACAACCTAGGCCACCA
GTTACGTTATTGAAGATGTTGATGGTTATGATCCTAAATCTGTTTTGTAAGTGATGTGGATTTTGATGACTAGGGTGGTC
ATCTTAAGGTGGATCAGATTTTCTTATTCTTGGGCAAGTTGTTATTTCTCCTTTTGATGACTCTATTTGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis