Browse Element(s) Details


Os.52175.1.S1_at

Description gb:AK065439.1
DB_XREF= gi:32975457
TID=Os.52175.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025D05, full insert sequence.
FL= gb:AK065439.1 gb:AK067624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6503011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64980Os.32637.1.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.2.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.3.S1_x_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64990Os.46001.1.S1_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g64990OsAffx.2410.1.A1_x_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g65000Os.25771.1.S1_at9/111+38062129..38064490Ammonium transporter 2, putative, expressed
LOC_Os01g65010OsAffx.29815.1.S1_x_at1/111+38066314..38069570D-mannose binding lectin family protein, expressed
LOC_Os01g65030Os.52175.1.S1_at11/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65030OsAffx.11739.1.S1_x_at2/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65040OsAffx.11739.1.S1_x_at11/111+38079472..38079912hypothetical protein
LOC_Os01g65050NANA1+38084519..38085268hypothetical protein
LOC_Os01g65060NANA1+38087406..38089148S-domain receptor-like protein kinase, putative
LOC_Os01g65070Os.9689.1.S1_at11/111+38090281..38097251hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52175.1.S1_at--1002--6031Chr01:38072671..38072695 (25 bp)
GAGATCACTCCAAATCCTCGCGGAC
LOC_Os01g65030
Os.52175.1.S1_at--560--4691Chr01:38072652..38072676 (25 bp)
GCGGACCTCGCGAATCAGTCGAATA
LOC_Os01g65030
Os.52175.1.S1_at--1066--5211Chr01:38072632..38072656 (25 bp)
GAATAACTTGCGGTTTTTCTCCGAT
LOC_Os01g65030
Os.52175.1.S1_at--1098--10371Chr01:38072618..38072642 (25 bp)
TTTTCTCCGATTTACCGTCAAAGTG
LOC_Os01g65030
Os.52175.1.S1_at--780--4671Chr01:38072591..38072615 (25 bp)
GCGGTTGCAGGCTTGACGCCAGTCT
LOC_Os01g65030
Os.52175.1.S1_at--233--4351Chr01:38072573..38072597 (25 bp)
CCAGTCTGCGTTTGGGCGGCTAAGC
LOC_Os01g65030
Os.52175.1.S1_at--233--4691Chr01:38072558..38072582 (25 bp)
GCGGCTAAGCGTTAAAATCGCCAGA
LOC_Os01g65030
Os.52175.1.S1_at--177--2271Chr01:38072544..38072568 (25 bp)
AAATCGCCAGAACTTGCATACTCAC
LOC_Os01g65030
Os.52175.1.S1_at--867--9012Chr02:8424606..8424629 (24 bp)
TGCATACTCACGTTACCAAAACTTG
NONE
Os.52175.1.S1_at--214--2512Chr07:22685545..22685564 (20 bp)
AACTTGCTATACTTCATTTAACTAA
NONE
Os.52175.1.S1_at--1014--971Chr01:38072440..38072464 (25 bp)
AGGAGAGTACACTTGCCACACTTTT
LOC_Os01g65030
Target Sequence 
GAGATCACTCCAAATCCTCGCGGACCTCGCGAATCAGTCGAATAACTTGCGGTTTTTCTCCGATTTACCGTCAAAGTGAG
GCGGTTGCAGGCTTGACGCCAGTCTGCGTTTGGGCGGCTAAGCGTTAAAATCGCCAGAACTTGCATACTCACGTTACCAA
AACTTGCTATACTTCATTTAACTAACATGCTTAACATGTGGCCAATAAAATTGAAGCCATACTTCAGCCATAGGAGAGTA
CACTTGCCACACTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis