Browse Element(s) Details


Os.52179.1.S1_at

Description gb:AK065469.1
DB_XREF= gi:32975487
TID=Os.52179.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52179 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013009B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013009B01, full insert sequence.
FL= gb:AK065469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g337409/11Zinc finger, ZZ type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33690Os.17433.1.S1_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690Os.46223.1.S1_s_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.2.S1_s_at8/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.1.S1_s_at7/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33700NANA9+19907320..19907562expressed protein
LOC_Os09g33710Os.52315.1.S1_at11/119+19908250..19914000Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g33720Os.54030.1.S1_at11/119+19917004..19919828Protein transport protein Sec61 alpha subunit isoform A, putative, expressed
LOC_Os09g33730OsAffx.30128.1.S1_s_at11/119+19920369..19921029expressed protein
LOC_Os09g33740OsAffx.6475.1.S1_at11/119+19921609..19931232Zinc finger, ZZ type family protein, expressed
LOC_Os09g33740Os.52179.1.S1_at9/119+19921609..19931232Zinc finger, ZZ type family protein, expressed
LOC_Os09g33750NANA9+19932715..19937200retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g33760NANA9+19938391..19938945retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g33770OsAffx.17988.1.S1_at11/119+19940056..19940697Protein transport protein Sec61 alpha subunit isoform 1, putative
LOC_Os09g33780Os.5192.1.S1_at9/119+19943043..19948238expressed protein
LOC_Os09g33790Os.20359.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33790OsAffx.6476.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33800Os.9057.1.S1_a_at11/119+19955242..19957444expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52179.1.S1_at--934--5451NONE
GAGACTCTCTACAGGGAATAGTCCT
NONE
Os.52179.1.S1_at--1117--5211Chr09:19925873..19925897 (25 bp)
GAATAGTCCTATTGAGCAATCCCGT
LOC_Os09g33740
Os.52179.1.S1_at--493--5191Chr09:19925888..19925912 (25 bp)
GCAATCCCGTCAAACCATCATTTAT
LOC_Os09g33740
Os.52179.1.S1_at--99--7671NONE
GGGATTCCAAAGGTTCTTGGCACAG
NONE
Os.52179.1.S1_at--654--10471Chr09:19926854..19926878 (25 bp)
TTACTGATGCCAAGTTTTAACTATA
LOC_Os09g33740
Os.52179.1.S1_at--354--3211Chr09:19926911..19926935 (25 bp)
CAAGGTGAACACATTTTTGGGTAGA
LOC_Os09g33740
Os.52179.1.S1_at--776--8631Chr09:19926928..19926952 (25 bp)
TGGGTAGAAATGCACATCAGATTAT
LOC_Os09g33740
Os.52179.1.S1_at--988--2751Chr09:19926964..19926988 (25 bp)
AAGACATAATGCTGCAGGTCACAGA
LOC_Os09g33740
Os.52179.1.S1_at--401--1031Chr09:19926979..19927003 (25 bp)
AGGTCACAGATAACACTTGCTTATT
LOC_Os09g33740
Os.52179.1.S1_at--882--2991Chr09:19927024..19927048 (25 bp)
AATGATGAGGTTCTAGCAATGGCTA
LOC_Os09g33740
Os.52179.1.S1_at--627--2751Chr09:19927050..19927074 (25 bp)
AAGAAAGCCTATTCTTGATGGGAAG
LOC_Os09g33740
Target Sequence 
GAGACTCTCTACAGGGAATAGTCCTATTGAGCAATCCCGTCAAACCATCATTTATTGTGCATATGGTCAATTGGCTATTG
GCAAGAATTGTTGCTGCACTTCTGTGGTCTTTGCATAATCTGGCAAAGAAGTTAGTATTCAAGAAAATCCATTCTGCAAT
TGGGATTCCAAAGGTTCTTGGCACAGTTGGTACCCAGTAAAGCACACGGAAATCAAGGTAGTGAGCATAGAGAATAGTGA
GGTTCTCGCAGATGGTTCAAAGGGGGTTGTGAAAGTCAGAGGACCTCAAGTGATGAAGGGATATTACAAGGATCATTTTT
TCCAGTTTACTGATGCCAAGTTTTAACTATAAATTAAATTGAGCTGTAAACAGTTGTTTGGGTCAAGGTGAACACATTTT
TGGGTAGAAATGCACATCAGATTATATATCTTGGTAAAGACATAATGCTGCAGGTCACAGATAACACTTGCTTATTGTAA
ACATCATAGTTGTAGCAATGATGAGGTTCTAGCAATGGCTAAAAGAAAGCCTATTCTTGATGGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis