Browse Element(s) Details


Os.52185.1.A1_at

Description gb:AK065524.1
DB_XREF= gi:32975542
TID=Os.52185.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031N02, full insert sequence.
FL= gb:AK065524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3579011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35750OsAffx.14165.1.S1_at11/114+21604132..21604837expressed protein
LOC_Os04g35750OsAffx.14165.1.S1_x_at11/114+21604132..21604837expressed protein
LOC_Os04g35760Os.52307.1.S1_at11/114+21605505..21607861expressed protein
LOC_Os04g35770Os.52558.1.S1_at11/114+21608081..21609864Pectinesterase family protein, expressed
LOC_Os04g35770OsAffx.26346.1.S1_s_at11/114+21608081..21609864Pectinesterase family protein, expressed
LOC_Os04g35780Os.6341.1.S1_at11/114+21611821..21614243cytoplasm protein, putative, expressed
LOC_Os04g35790Os.52185.1.A1_at11/114+21624777..21628755expressed protein
LOC_Os04g35800Os.51094.1.A1_at10/114+21630798..21636341Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g35810OsAffx.26347.1.S1_at11/114+21639715..21641126hypothetical protein
LOC_Os04g35820NANA4+21642556..21642867hypothetical protein
LOC_Os04g35830OsAffx.14166.1.S1_at8/114+21648529..21652604hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52185.1.A1_at--709--5251Chr04:21625532..21625556 (25 bp)
GAATCTGCATACATGGTCACTCTAA
LOC_Os04g35790
Os.52185.1.A1_at--984--851Chr04:21625503..21625527 (25 bp)
ATGGCATGGGTGGATCTCTTCAGCA
LOC_Os04g35790
Os.52185.1.A1_at--744--5351Chr04:21625341..21625365 (25 bp)
GAAGATGTTCATCAACCTGCTCGTT
LOC_Os04g35790
Os.52185.1.A1_at--1043--3271Chr04:21625267..21625291 (25 bp)
CAAAGTTGCTTAAGCCCTTCCTTGA
LOC_Os04g35790
Os.52185.1.A1_at--834--291Chr04:21625043..21625067 (25 bp)
ATACGGCCTTGGTCAGCTGGTTTGG
LOC_Os04g35790
Os.52185.1.A1_at--613--7331Chr04:21624910..21624934 (25 bp)
GTGCAGTGTGTACCAATTTGCCAGA
LOC_Os04g35790
Os.52185.1.A1_at--379--8271Chr04:21624876..21624900 (25 bp)
GGCAGTGTACTTTGGTCATCCTTAT
LOC_Os04g35790
Os.52185.1.A1_at--1126--6071Chr04:21624849..21624873 (25 bp)
GAGTATCGCATTTTCAGTCCTTTCC
LOC_Os04g35790
Os.52185.1.A1_at--180--1151Chr04:21624834..21624858 (25 bp)
AGTCCTTTCCTGTCATTGGTCATCT
LOC_Os04g35790
Os.52185.1.A1_at--669--8591Chr04:21624818..21624842 (25 bp)
TGGTCATCTCCAAACTGCTGCAGTT
LOC_Os04g35790
Os.52185.1.A1_at--452--6371Chr04:21624787..21624811 (25 bp)
GATCCCCTACTCAATATTCAACAAA
LOC_Os04g35790
Target Sequence 
GAATCTGCATACATGGTCACTCTAAAGCCATGGCATGGGTGGATCTCTTCAGCAGCCTACAAGATCGCAATGAAACTCAT
TCCTGACAGGAAGATGTTCATCAACCTGCTCGTTGGCAAATGCCAAGATTGTGCTGCTCTGAAGGAGGAGATTCGAAAGC
TCGCAAAGTTGCTTAAGCCCTTCCTTGACGATATCCATGCCATGATGGCGAAGTTCAGATTGGACCGGCTGAAATCAACT
TGATGGCAAGCCTATAAATTGTCGTTGTAATATGTGAATGTGGATACGGGGCATACGGCCTTGGTCAGCTGGTTTGGCTG
TGTACAGATCCCCCTCCCCCTTCNTTTTTTTTTGTGGTAGTACCGTAGTAGTAGTGTAACTCTGTAAATAGGTCTTCAGT
TAGAGTAGAACTGCAGGTTTATAGTGTGCAGTGTGTACCAATTTGCCAGATGAAGACTAGGCAGTGTACTTTGGTCATCC
TTATAGGAGTATCGCATTTTCAGTCCTTTCCTGTCATTGGTCATCTCCAAACTGCTGCAGTTTTTCAAGATCCCCTACTC
AATATTCAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52185.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis