Browse Element(s) Details


Os.52196.1.S1_at

Description gb:AK065561.1
DB_XREF= gi:32975579
TID=Os.52196.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033I11, full insert sequence.
FL= gb:AK101582.1 gb:AK065561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0428011/11Actin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04230Os.6113.1.S1_at11/118+2053310..205489933 kDa secretory protein, putative, expressed
LOC_Os08g04240Os.2227.1.S1_at11/118+2056863..205856533 kDa secretory protein, putative, expressed
LOC_Os08g04250Os.8838.2.S1_at11/118+2060053..206143133 kDa secretory protein, putative, expressed
LOC_Os08g04260NANA8+2066196..2066977hypothetical protein
LOC_Os08g04270Os.18661.1.S1_at11/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04270OsAffx.16132.1.S1_at1/118+2070890..2076976Polycomb group protein FIE2, putative, expressed
LOC_Os08g04280Os.52196.1.S1_at11/118+2078228..2087336Actin family protein, expressed
LOC_Os08g04280OsAffx.17544.1.S1_at1/118+2078228..2087336Actin family protein, expressed
LOC_Os08g04290OsAffx.16823.1.S1_at10/118+2089543..2094035Polycomb group protein FIE2, putative
LOC_Os08g04300Os.50199.1.S1_at11/118+2101974..2105683fringe protein, putative, expressed
LOC_Os08g04310Os.14191.1.S1_at11/118+2109339..2110694Plastocyanin-like domain containing protein, expressed
LOC_Os08g04320OsAffx.25936.1.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.7.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.2.S1_x_at4/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.5.S1_x_at1/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006325biological_processestablishment and/or maintenance of chromatin architecture
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0048364biological_processroot development
GO:0048574biological_processlong-day photoperiodism, flowering
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52196.1.S1_at--782--7691Chr08:2086654..2086678 (25 bp)
GGGTCGTTCCAGCAAATGTGGTTCT
LOC_Os08g04280
Os.52196.1.S1_at--46--4991Chr08:2086829..2086853 (25 bp)
GCATCGCTACGATTTGTGACCAAAT
LOC_Os08g04280
Os.52196.1.S1_at--546--8631Chr08:2086865..2086889 (25 bp)
TGGGCAATCGTATTACAGCCACCCT
LOC_Os08g04280
Os.52196.1.S1_at--983--1691Chr08:2086881..2086905 (25 bp)
AGCCACCCTGTTGTTGATCTATATC
LOC_Os08g04280
Os.52196.1.S1_at--316--9631Chr08:2087024..2087048 (25 bp)
TCATGTGTTGAATCTGTTCTCCCTG
LOC_Os08g04280
Os.52196.1.S1_at--837--6711Chr08:2087039..2087063 (25 bp)
GTTCTCCCTGCTGTAGAATGTATCG
LOC_Os08g04280
Os.52196.1.S1_at--1111--5271Chr08:2087054..2087078 (25 bp)
GAATGTATCGAGTTGCTGCTCTCTA
LOC_Os08g04280
Os.52196.1.S1_at--820--8811Chr08:2087125..2087149 (25 bp)
TGTTGTACTACTTATACGCCACCTG
LOC_Os08g04280
Os.52196.1.S1_at--99--1831Chr08:2087140..2087164 (25 bp)
ACGCCACCTGATTAGTCATGTCAAC
LOC_Os08g04280
Os.52196.1.S1_at--136--8571Chr08:2087245..2087269 (25 bp)
TGGATCTTTATCAGCCACCGTCAGA
LOC_Os08g04280
Os.52196.1.S1_at--235--9571Chr08:2087287..2087311 (25 bp)
TCTTCATCAGACGTGTGTGCCAATC
LOC_Os08g04280
Target Sequence 
GGGTCGTTCCAGCAAATGTGGTTCTCCAAAGCAGAATACGAAGAACATGGAGTATCCTACATCCAAAGGAAGTGCCCATG
AAGTTGTGGAGCATCGCTACGATTTGTGACCAAATTTGGGTGCATGTGGGCAATCGTATTACAGCCACCCTGTTGTTGAT
CTATATCGACTATTATCCGACGATATTTATCATTATATTATGACTAGTTAGTTTGTAGATTTTGAGAGGGCAACATAAGA
AGCAATCCAGCTTAACCTGTTATGTTCTTGATGGTAGATTCTAGTTCATGTGTTGAATCTGTTCTCCCTGCTGTAGAATG
TATCGAGTTGCTGCTCTCTACTCTGTACTTTTAGAATACCTTTTCAATCATTTGGAGTCAGCTGATTGTTGTACTACTTA
TACGCCACCTGATTAGTCATGTCAACAATTAAACTTGAGCACTGGTTAAGTTAAGAGTGGCCTGATTGTAGTTGATAATC
ACATTTTATTCGTAGACATTGTATGCTGGATCTTTATCAGCCACCGTCAGATCATCCTCTGTAATAAATCTTCATCAGAC
GTGTGTGCCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis