Browse Element(s) Details


Os.52209.1.S1_at

Description gb:AK065636.1
DB_XREF= gi:32975654
TID=Os.52209.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013031F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031F12, full insert sequence.
FL= gb:AK065636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0748011/11Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07420Os.55262.1.S1_at11/112+3830522..3832332expressed protein
LOC_Os02g07420Os.55262.1.S1_x_at11/112+3830522..3832332expressed protein
LOC_Os02g07430Os.56165.1.S1_at11/112+3833127..3837132MADS-box protein ZMM17, putative, expressed
LOC_Os02g07440OsAffx.2537.1.S1_at11/112+3843535..3843984hypothetical protein
LOC_Os02g07450Os.10876.1.S1_at11/112+3846200..3850113Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os02g07460NANA2+3853274..3853732expressed protein
LOC_Os02g07480Os.24548.1.A1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07480Os.52209.1.S1_at11/112+3855963..3863869Transglycosylase SLT domain PF|01464 containing protein, putative, expressed
LOC_Os02g07470OsAffx.11928.1.S1_at11/112+3863744..3864874hypothetical protein
LOC_Os02g07490Os.48052.1.S1_at11/112+3868112..3872942Glyceraldehyde-3-phosphate dehydrogenase, cytosolic, putative, expressed
LOC_Os02g07500OsAffx.8801.1.S1_at1/112+3879912..3882999hypothetical protein
LOC_Os02g07510NANA2+3886548..3888154hypothetical protein
LOC_Os02g07520OsAffx.22699.1.S1_x_at2/112+3888538..3895439retrotransposon protein, putative, unclassified
LOC_Os02g07520Os.45161.1.A1_x_at1/112+3888538..3895439retrotransposon protein, putative, unclassified
LOC_Os02g07520OsAffx.16451.1.A1_x_at1/112+3888538..3895439retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52209.1.S1_at--610--1991Chr02:3862792..3862816 (25 bp)
ACTCCATGTTGTTGCTATGAGCTCA
LOC_Os02g07480
Os.52209.1.S1_at--249--6951Chr02:3862747..3862771 (25 bp)
GTAGAAGCGCGGATGCTTTTCGCAT
LOC_Os02g07480
Os.52209.1.S1_at--1141--9551Chr02:3862697..3862721 (25 bp)
TCTTATTGTTTGCTCACTTCTTTTC
LOC_Os02g07480
Os.52209.1.S1_at--554--5131Chr02:3862653..3862677 (25 bp)
GCAACGTTCCCATTCCTAATTATTT
LOC_Os02g07480
Os.52209.1.S1_at--966--151Chr02:3862635..3862659 (25 bp)
ATTATTTGATGGCTTCTAACTGTTC
LOC_Os02g07480
Os.52209.1.S1_at--121--8791Chr02:3862615..3862639 (25 bp)
TGTTCAAAATTCCATCACCCTCTAT
LOC_Os02g07480
Os.52209.1.S1_at--125--1811Chr02:3862599..3862623 (25 bp)
ACCCTCTATGTCAACCCTGAACAAA
LOC_Os02g07480
Os.52209.1.S1_at--171--8251Chr02:3862565..3862589 (25 bp)
GGCACATTGGATTTCCTTTTGCTTT
LOC_Os02g07480
Os.52209.1.S1_at--647--10791Chr02:3862506..3862530 (25 bp)
TTGTTGCTCCCAGTGTAGATCGACA
LOC_Os02g07480
Os.52209.1.S1_at--489--3391Chr02:3862271..3862295 (25 bp)
CAGCTGTAGCCAGTGTATCTTGACA
LOC_Os02g07480
Os.52209.1.S1_at--14--6911Chr02:3862257..3862281 (25 bp)
GTATCTTGACATCTAAAACCTGCAT
LOC_Os02g07480
Target Sequence 
ACTCCATGTTGTTGCTATGAGCTCAAATTGAATGCATAGTTGGTTGTAGAAGCGCGGATGCTTTTCGCATCTATTACGAT
GCAATCAGAACATATTCTTATTGTTTGCTCACTTCTTTTCTTTTTTTGTTTTTGTTTTGGCAACGTTCCCATTCCTAATT
ATTTGATGGCTTCTAACTGTTCAAAATTCCATCACCCTCTATGTCAACCCTGAACAAAATGCAGATTGGCACATTGGATT
TCCTTTTGCTTTAAGGAAGTTATCCTATTGCATATAATTTTCATATTTGTTGCTCCCAGTGTAGATCGACAGATACAATT
GCTAATTAGTACAAAATGGCTATAAGCTTCAAATATTGGGATGACTGCTTGGATCCAGAGGATATGCAATTAATGTGGGC
TGATCCTCATGTAAGTAAAGAGTGGATTGATGCTGGGGAAGGGCCGGGACAGAAGGTTCACCTGTCACGGGATCCTGATG
GTGAGGCATATCTCACACAAACTGAAATGATGGTGAGTGATCAGCTGTAGCCAGTGTATCTTGACATCTAAAACCTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis