Browse Element(s) Details


Os.52212.1.S1_at

Description gb:AK065666.1
DB_XREF= gi:32975684
TID=Os.52212.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013040B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013040B10, full insert sequence.
FL= gb:AK065666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0567010/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05620NANA8+3000897..3002447Cytochrome P450 89A2, putative, expressed
LOC_Os08g05630Os.18267.1.S1_at11/118+3003288..3006183expressed protein
LOC_Os08g05640Os.8813.1.S1_s_at11/118+3007463..3009986pleckstrin homology domain-containing protein, putative, expressed
LOC_Os08g05650Os.25510.1.S1_at11/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05650Os.46700.1.S1_at1/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05660Os.12311.2.S1_at2/118+3016705..3020402LOC548366 protein, putative, expressed
LOC_Os08g05670Os.52212.1.S1_at10/118+3024938..3032121HEAT repeat family protein, expressed
LOC_Os08g05670OsAffx.29049.1.S1_at8/118+3024938..3032121HEAT repeat family protein, expressed
LOC_Os08g05680NANA8+3040165..3040594hypothetical protein
LOC_Os08g05690OsAffx.16842.1.S1_at11/118+3043824..3049729ABC transporter family protein
LOC_Os08g05700NANA8+3052200..3053044hypothetical protein
LOC_Os08g05710OsAffx.29051.1.S1_at11/118+3055522..3061514ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52212.1.S1_at--104--2731Chr08:3025510..3025534 (25 bp)
AAGCAGCATGACAGTGGCCGTCTTC
LOC_Os08g05670
Os.52212.1.S1_at--1052--4391Chr08:3025474..3025498 (25 bp)
GCCAACTCATCATCTATTCATTTTC
LOC_Os08g05670
Os.52212.1.S1_at--636--731Chr08:3025353..3025377 (25 bp)
ATGTTCATGAACAAGCTCCTGGCAG
LOC_Os08g05670
Os.52212.1.S1_at--840--2551Chr08:3025298..3025322 (25 bp)
AACTGCATCTGCGTATCTTATTTAT
LOC_Os08g05670
Os.52212.1.S1_at--687--10351Chr08:3025252..3025276 (25 bp)
TTTTTTCCAGGTGTGGCCATGTTCT
LOC_Os08g05670
Os.52212.1.S1_at--570--4431Chr08:3025237..3025261 (25 bp)
GCCATGTTCTGCACCTTATGTGTAA
LOC_Os08g05670
Os.52212.1.S1_at--699--3891Chr08:3025105..3025129 (25 bp)
CTGGTAGACCAGATAGCTTCATGCT
LOC_Os08g05670
Os.52212.1.S1_at--639--2811Chr08:3025076..3025100 (25 bp)
AAGATTTGTCCTGGGCTTGAATGCC
LOC_Os08g05670
Os.52212.1.S1_at--987--5251Chr08:3025058..3025082 (25 bp)
GAATGCCTGGTTAGCTTGATTAGAC
LOC_Os08g05670
Os.52212.1.S1_at--252--51Chr08:3025020..3025044 (25 bp)
ATTGTTCCTCACTATCTATTACTCC
LOC_Os08g05670
Os.52212.1.S1_at--386--3031Chr08:3024938..3024962 (25 bp)
AATGCCAGCCATTTCAGTTGGCGCT
NONE
Target Sequence 
AAGCAGCATGACAGTGGCCGTCTTCCTCCCGGAAAAGCCAACTCATCATCTATTCATTTTCAATCTCCTTCATAAAGAGA
GGCAACATGCCCTATTGCAAGTATTCCATGAACTCAATGAAGCTTCTGAATTTCGATGATACCAGACGTTGGACATTATG
TTCATGAACAAGCTCCTGGCAGCTTCTAATGGGAAGGGGGGGGGGGATTCAAAACTGCATCTGCGTATCTTATTTATATT
GTAAAATAGCTTTACCTGTTTTTTCCAGGTGTGGCCATGTTCTGCACCTTATGTGTAAATTTTGAGCTTTGTACAAAGAT
TTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAAATCTTCCACAAATTTTGTATGTA
CATTTCTGGTAGACCAGATAGCTTCATGCTACTTAAGATTTGTCCTGGGCTTGAATGCCTGGTTAGCTTGATTAGACCAC
TAGCTTGATGATTGTTCCTCACTATCTATTACTCCTATCTGTTAGTACTGAAAAACTGATCAGTTGTCAATGTCTTAATG
CAACAGAAAATGAATGCCAGCCATTTCAGTTGGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis