Browse Element(s) Details


Os.52222.1.S1_at

Description gb:AK065719.1
DB_XREF= gi:32975737
TID=Os.52222.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038C18, full insert sequence.
FL= gb:AK065719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4148011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41450Os.27788.1.S1_at11/116+24842687..24843763VQ motif family protein, expressed
LOC_Os06g41460Os.10827.1.S1_x_at11/116+24849445..24852357transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41460Os.46055.2.S1_x_at6/116+24849445..24852357transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470OsAffx.25936.1.S1_s_at11/116+24855831..24858767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470OsAffx.25936.7.S1_s_at11/116+24855831..24858767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470OsAffx.25936.2.S1_x_at5/116+24855831..24858767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41470OsAffx.25936.5.S1_x_at2/116+24855831..24858767transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41480Os.52222.1.S1_at11/116+24865900..24870160NB-ARC domain containing protein, expressed
LOC_Os06g41490OsAffx.5077.1.S1_at10/116+24872664..24874065hypothetical protein
LOC_Os06g41490OsAffx.8169.1.S1_at2/116+24872664..24874065hypothetical protein
LOC_Os06g41500OsAffx.28042.1.S1_at11/116+24876427..24878413D-mannose binding lectin family protein
LOC_Os06g41510OsAffx.28042.2.S1_at11/116+24887619..24890114D-mannose binding lectin family protein
LOC_Os06g41520OsAffx.28043.1.S1_at11/116+24893279..24894834F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52222.1.S1_at--676--2451Chr06:24869213..24869237 (25 bp)
AAAATTTCTGTTTCTTGCCAGCTGA
LOC_Os06g41480
Os.52222.1.S1_at--674--2071Chr06:24869263..24869287 (25 bp)
ACATTAGCCATTTATGGGTGCCCTA
LOC_Os06g41480
Os.52222.1.S1_at--349--3991Chr06:24869313..24869337 (25 bp)
CGTACCAGCTTCTCTACAGTTAATT
LOC_Os06g41480
Os.52222.1.S1_at--644--4731Chr06:24869340..24869364 (25 bp)
GCTGTCACTGTTGCATCCAGAGTTA
LOC_Os06g41480
Os.52222.1.S1_at--1133--2211Chr06:24869402..24869426 (25 bp)
ACAAGATTGCTCATGTTCCTGAAAA
LOC_Os06g41480
Os.52222.1.S1_at--253--6531Chr06:24869777..24869801 (25 bp)
GATTTGTTGACACTGTTTCCATCCA
LOC_Os06g41480
Os.52222.1.S1_at--723--10291Chr06:24869792..24869816 (25 bp)
TTTCCATCCAGTTCTTTCTGACGAG
LOC_Os06g41480
Os.52222.1.S1_at--899--8111Chr06:24869830..24869854 (25 bp)
GGACGTGTGGTATGCCTTCCTGAAC
LOC_Os06g41480
Os.52222.1.S1_at--772--2631Chr06:24869852..24869876 (25 bp)
AACCACTCTACTACATTTACTTCAA
LOC_Os06g41480
Os.52222.1.S1_at--719--9971Chr06:24870009..24870033 (25 bp)
TACCTTTGCAGTTTATCAGTGCCAA
LOC_Os06g41480
Os.52222.1.S1_at--62--831Chr06:24870092..24870116 (25 bp)
ATGGTACGCAACATCTCAACTAGAA
LOC_Os06g41480
Target Sequence 
AAAATTTCTGTTTCTTGCCAGCTGATCTGAATGCATTAATATCTCTCAAAACATTAGCCATTTATGGGTGCCCTAAGATG
AAATTTCTCCCCCAGAATGGCGTACCAGCTTCTCTACAGTTAATTTTGCTGTCACTGTTGCATCCAGAGTTAGACAGACA
GCTTCAAAGGAGGGAAGGTACTGAATGGGACAAGATTGCTCATGTTCCTGAAAAGAAACTAGAGGTAGAGCTAATTGATT
TGTTGACACTGTTTCCATCCAGTTCTTTCTGACGAGTGTTGTCATTTTTGGACGTGTGGTATGCCTTCCTGAACCACTCT
ACTACATTTACTTCAACCGAATAACTACTAGTCATGCTCACAAAAACTCATATATGGGCATTACTACCTTTGCAGTTTAT
CAGTGCCAAACTGCCAATTCCTGAAGTAGAGGTTGTTTCAAGCTGAATGCTATTTAGACCATTTTGAATGGTACGCAACA
TCTCAACTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis