Browse Element(s) Details


Os.5229.1.S1_at

Description gb:AK067179.1
DB_XREF= gi:32977197
TID=Os.5229.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097F03, full insert sequence.
FL= gb:AK058790.1 gb:AK067179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3328011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33230Os.53333.1.S1_at11/115+19399724..19405264Cobalt transport protein, expressed
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g33280Os.5229.1.S1_at11/115+19424390..19425948expressed protein
LOC_Os05g33290OsAffx.14935.1.S1_at10/115+19426854..19431019expressed protein
LOC_Os05g33300Os.27608.1.A1_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_s_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300OsAffx.14936.1.S1_at9/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_at7/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33310Os.12714.1.S1_at1/115+19442499..19445837oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g33320OsAffx.14937.1.S1_at10/115+19448044..19450049expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5229.1.S1_at--782--1431Chr05:19424904..19425013 (25 bp)
AGAACCTCCCAGTGCTGGCGACGGA
LOC_Os05g33280
Os.5229.1.S1_at--746--2591Chr05:19424869..19424893 (25 bp)
AACGAGGCAATCTACACGACGGCGA
LOC_Os05g33280
Os.5229.1.S1_at--732--4651Chr05:19424805..19424829 (25 bp)
GCGGGCCGACGTTCAAGGACAACAA
LOC_Os05g33280
Os.5229.1.S1_at--842--6131Chr05:19424780..19424804 (25 bp)
GAGGGAGTCCAACTTCAAGACGAAG
LOC_Os05g33280
Os.5229.1.S1_at--585--3711Chr05:19424669..19424693 (25 bp)
CTACGCCTACATCTCCAAGAAGTGA
LOC_Os05g33280
Os.5229.1.S1_at--147--5291Chr05:19424651..19424675 (25 bp)
GAAGTGAACAGCAGCGGCTACCTGT
LOC_Os05g33280
Os.5229.1.S1_at--745--4691Chr05:19424638..19424662 (25 bp)
GCGGCTACCTGTTCTTTCCAACAAA
LOC_Os05g33280
Os.5229.1.S1_at--74--7791Chr05:19424586..19424610 (25 bp)
GGTGCTGCTCTGTACAGTAAATTTG
LOC_Os05g33280
Os.5229.1.S1_at--538--831Chr05:19424553..19424577 (25 bp)
ATGGCTAAATCTCCCGGTTTTCTGT
LOC_Os05g33280
Os.5229.1.S1_at--810--711Chr05:19424500..19424524 (25 bp)
ATGATGAACACAGGTGCACCACCGT
LOC_Os05g33280
Os.5229.1.S1_at--68--6591Chr05:19424401..19424425 (25 bp)
GATTCCTCTTCTTCTATAACCATTT
LOC_Os05g33280
Target Sequence 
AGAACCTCCCAGTGCTGGCGACGGACGAGAAGTACAACGAGGCAATCTACACGACGGCGAAGCGGCTGGCGGCGGCGATC
GACGGGCTGCCGGACCCCGGCGGGCCGACGTTCAAGGACAACAAGAGGGAGTCCAACTTCAAGACGAAGGAGGAGACGGA
GGAGAAGCGCGGCCAGTTCACGCTCGTCGTCGGCGGCCTGCTCGTCATCGCCTTCGTCGTGCCCATGGCGCAGTACTACG
CCTACATCTCCAAGAAGTGAACAGCAGCGGCTACCTGTTCTTTCCAACAAAAAAAGAGAGAAAAAATGAGCAGCATATGG
TGCTGCTCTGTACAGTAAATTTGCTCAGGAGATGGCTAAATCTCCCGGTTTTCTGTCGGAATTTTAGAGGCGAAACAGAG
AATTATGATGAACACAGGTGCACCACCGTGCCGGTTAATTTTTATTGTAGTAGCATAACTGAGGCACTGAGCAATTAGGT
GCAAATCAGCACTTCCTTACCCCGATTCCTCTTCTTCTATAACCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis