Browse Element(s) Details


Os.52297.1.S1_at

Description gb:AK066183.1
DB_XREF= gi:32976201
TID=Os.52297.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013056O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056O11, full insert sequence.
FL= gb:AK066183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3771011/11Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os07g173902/11Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37669NANA12+23090713..23092094hypothetical protein
LOC_Os12g37680OsAffx.32072.2.S1_x_at4/1112+23097306..23097563hypothetical protein
LOC_Os12g37680OsAffx.32072.1.S1_x_at2/1112+23097306..23097563hypothetical protein
LOC_Os12g37690Os.20224.1.S1_at11/1112+23101523..23103753Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g37710Os.50984.1.S1_s_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37710Os.52297.1.S1_at11/1112+23114779..23123626Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os12g37720Os.26814.1.S1_x_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37720Os.26814.2.S1_at11/1112+23123624..23131123zinc knuckle family protein, putative, expressed
LOC_Os12g37730NANA12+23131370..23131983hypothetical protein
LOC_Os12g37740Os.54395.1.S1_at11/1112+23133627..23138411NB-ARC domain containing protein, expressed
LOC_Os12g37750Os.50330.1.S1_at10/1112+23139638..23142379expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009654cellular_componentoxygen evolving complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52297.1.S1_at--31--5331Chr12:23122982..23123006 (25 bp)
GAAGTTGAGGTGAACCAAACAGATT
LOC_Os12g37710
Os.52297.1.S1_at--240--2492Chr12:23122999..23123023 (25 bp)
AACAGATTATACAAATTCCCATTCA
LOC_Os12g37710
Os.52297.1.S1_at--184--3291Chr12:23123010..23123034 (25 bp)
CAAATTCCCATTCATAACTCACATA
LOC_Os12g37710
Os.52297.1.S1_at--146--3571Chr12:23123022..23123046 (25 bp)
CATAACTCACATAATCAGCCTGCAA
LOC_Os12g37710
Os.52297.1.S1_at--1088--3071Chr12:23123034..23123058 (25 bp)
AATCAGCCTGCAAAGTTCAGTTTGT
LOC_Os12g37710
Os.52297.1.S1_at--108--1231Chr12:23123047..23123071 (25 bp)
AGTTCAGTTTGTTTCTCCCACTGTT
LOC_Os12g37710
Os.52297.1.S1_at--970--10311Chr12:23123058..23123082 (25 bp)
TTTCTCCCACTGTTTGTTCAGAGAT
LOC_Os12g37710
Os.52297.1.S1_at--1086--9491Chr12:23123060..23123084 (25 bp)
TCTCCCACTGTTTGTTCAGAGATGC
LOC_Os12g37710
Os.52297.1.S1_at--166--2432Chr12:23123094..23123118 (25 bp)
AAAACCTGCATGAACATTCAGACAA
LOC_Os12g37710
Os.52297.1.S1_at--1145--5471Chr12:23123105..23123129 (25 bp)
GAACATTCAGACAAATTGCTTCTGC
LOC_Os12g37710
Os.52297.1.S1_at--72--9131Chr12:23123139..23123163 (25 bp)
TGCTGTTTTTGCAGGTGAATATCAA
LOC_Os12g37710
Target Sequence 
GAAGTTGAGGTGAACCAAACAGATTATACAAATTCCCATTCATAACTCACATAATCAGCCTGCAAAGTTCAGTTTGTTTC
TCCCACTGTTTGTTCAGAGATGCTTGAAAAAAAAACCTGCATGAACATTCAGACAAATTGCTTCTGCTGCTGCTGCTGCT
GTTTTTGCAGGTGAATATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis