Browse Element(s) Details


Os.52306.1.S1_at

Description gb:AK066271.1
DB_XREF= gi:32976289
TID=Os.52306.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060L21, full insert sequence.
FL= gb:AK066271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1500011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14950Os.19158.1.S1_at10/1111+8411811..8417027acetolactate synthase small subunit, putative, expressed
LOC_Os11g14960Os.28943.1.S1_x_at1/1111+8419653..8422891retrotransposon protein, putative, unclassified
LOC_Os11g14970NANA11+8423526..8429681retrotransposon protein, putative, unclassified
LOC_Os11g14980OsAffx.30983.1.S1_at11/1111+8434134..8435882pentatricopeptide, putative
LOC_Os11g14990Os.49548.1.S1_at11/1111+8437543..8440405expressed protein
LOC_Os11g15000Os.52306.1.S1_at11/1111+8440752..8441695expressed protein
LOC_Os11g15010Os.50187.1.S1_at11/1111+8441959..8443906transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g15020OsAffx.7114.1.S1_at11/1111+8448152..8448676expressed protein
LOC_Os11g15030OsAffx.18857.1.S1_at11/1111+8451461..8454568SAM dependent carboxyl methyltransferase family protein
LOC_Os11g15040Os.17356.1.A1_a_at11/1111+8461158..8463673Benzoate carboxyl methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52306.1.S1_at--1096--9651Chr11:8441034..8441058 (25 bp)
TCAGCATTCATCGAGGAGTCCCATC
LOC_Os11g15000
Os.52306.1.S1_at--370--6091Chr11:8441049..8441073 (25 bp)
GAGTCCCATCCCATATAGGGTTGGT
LOC_Os11g15000
Os.52306.1.S1_at--1027--10071Chr11:8441064..8441088 (25 bp)
TAGGGTTGGTCCTTTTGATTACCAG
LOC_Os11g15000
Os.52306.1.S1_at--250--10791Chr11:8441078..8441102 (25 bp)
TTGATTACCAGTCGGCCGTGATGTG
LOC_Os11g15000
Os.52306.1.S1_at--442--9151Chr11:8441101..8441125 (25 bp)
TGCGACTGTCGCGTGAAGGCTGCAT
LOC_Os11g15000
Os.52306.1.S1_at--696--2271Chr11:8441170..8441264 (25 bp)
AAATGTCGCAATGCCCAGGAAGGTG
LOC_Os11g15000
Os.52306.1.S1_at--1020--632Chr11:8441277..8441301 (25 bp)
ATGCTTGGTATGATGGGCCGACGAC
LOC_Os11g15000
Os.52306.1.S1_at--738--4511Chr11:8441293..8441317 (25 bp)
GCCGACGACCACCTTTATTAGAGAA
LOC_Os11g15000
Os.52306.1.S1_at--69--212Chr11:8441328..8441352 (25 bp)
ATTTGCGAGATGCAGTTTGGTCAGC
LOC_Os11g15000
Os.52306.1.S1_at--84--2351Chr11:8441460..8441484 (25 bp)
AAAGCTGTCATGTGACTATGCTGAA
LOC_Os11g15000
Os.52306.1.S1_at--314--6891Chr11:8441563..8441587 (25 bp)
GTATTTGTCATGTTTGCACTGGTGT
LOC_Os11g15000
Target Sequence 
TCAGCATTCATCGAGGAGTCCCATCCCATATAGGGTTGGTCCTTTTGATTACCAGTCGGCCGTGATGTGCGACTGTCGCG
TGAAGGCTGCATGGTGGATCTCGTGGAGTCCGGACAACCCCAGCCGCCGGTACTTCAAATGTCGCAATGCCCAGGAAGGT
GGATGTGGTTTTTATGCTTGGTATGATGGGCCGACGACCACCTTTATTAGAGAAGTGTTGAATGATTTGCGAGATGCAGT
TTGGTCAGCGAGGAGGGAGAAGGAAAGACTTGTTTGGCTATCCAAGAAGAGAGGATGAAGGTTGAGGAGAAGATAATAGA
GGTTGATGCTGCTCAAAGAGAGTTGGAGGCAGCAAGAAAGCTGTCATGTGACTATGCTGAAAGAATTGCTGTGCTGAAGG
ATAGAAATAGTAGGCTAGAGAAGGAGAGATGTTATCTGTTAGTTGTTGTTATGGGTTGTGTATTTGTCATGTTTGCACTG
GTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis