Browse Element(s) Details


Os.52313.1.S1_at

Description gb:AK066324.1
DB_XREF= gi:32976342
TID=Os.52313.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013062D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013062D13, full insert sequence.
FL= gb:AK066324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4229011/11cation exchanger, putative, expressed
LOC_Os02g203304/11hypothetical protein
LOC_Os08g422104/11cation exchanger, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42230Os.10827.1.S1_x_at11/118+26535995..26539282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42230Os.46055.2.S1_x_at6/118+26535995..26539282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42240NANA8+26539843..26540422hypothetical protein
LOC_Os08g42250OsAffx.25936.1.S1_s_at11/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.7.S1_s_at11/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.1.S1_at7/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.2.S1_x_at4/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42250OsAffx.25936.5.S1_x_at3/118+26542938..26546666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g42259OsAffx.29629.1.S1_at11/118+26551973..26553999hypothetical protein
LOC_Os08g42268Os.8731.2.S1_s_at11/118+26555144..26561260HEAT repeat family protein, expressed
LOC_Os08g42268OsAffx.19018.1.S1_x_at1/118+26555144..26561260HEAT repeat family protein, expressed
LOC_Os08g42277OsAffx.17472.1.S1_at5/118+26561695..26562126Auxin responsive protein
LOC_Os08g42290Os.52313.1.S1_x_at11/118+26564001..26566445cation exchanger, putative, expressed
LOC_Os08g42290Os.52313.1.S1_at11/118+26564001..26566445cation exchanger, putative, expressed
LOC_Os08g42299OsAffx.29629.1.S1_at11/118+26571876..26573902hypothetical protein
LOC_Os08g42310Os.54053.1.S1_at11/118+26575058..26579637expressed protein
LOC_Os08g42310Os.54053.2.S1_at11/118+26575058..26579637expressed protein
LOC_Os08g42320Os.27249.1.S1_at11/118+26580431..26583549expressed protein
LOC_Os08g42330NANA8+26586854..26587207hypothetical protein
LOC_Os08g42340NANA8+26589773..26590264hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52313.1.S1_at--914--8253Chr08:26564209..26564515 (25 bp)
GGCATCGAGCCGCAAGGTTTTTGTC
LOC_Os08g42290
Os.52313.1.S1_at--175--4093Chr08:26564214..26564520 (25 bp)
CGAGCCGCAAGGTTTTTGTCATATT
LOC_Os08g42290
Os.52313.1.S1_at--270--3513Chr08:26566284..26566308 (25 bp)
CATAATTATTACAATTAGCGAGCTA
LOC_Os08g42290
Os.52313.1.S1_at--169--9993Chr08:26566299..26566323 (25 bp)
TAGCGAGCTAATAATGGATGTAAAT
LOC_Os08g42290
Os.52313.1.S1_at--409--831Chr08:26566312..26566336 (25 bp)
ATGGATGTAAATTGTATGTTCTTTT
LOC_Os08g42290
Os.52313.1.S1_at--335--5514Chr08:26566361..26566385 (25 bp)
GAACACATTTATCTTTTCTATGGAC
LOC_Os08g42290
Os.52313.1.S1_at--174--175Chr08:26566367..26566391 (25 bp)
ATTTATCTTTTCTATGGACCCTTTG
LOC_Os08g42290
Os.52313.1.S1_at--1111--434Chr08:26566371..26566395 (25 bp)
ATCTTTTCTATGGACCCTTTGTATA
LOC_Os08g42290
Os.52313.1.S1_at--264--3675Chr08:26566378..26566402 (25 bp)
CTATGGACCCTTTGTATATTACTAA
LOC_Os08g42290
Os.52313.1.S1_at--435--6794Chr08:26566391..26566415 (25 bp)
GTATATTACTAAATCCGGTTTGAAT
LOC_Os08g42290
Os.52313.1.S1_at--611--8738Chr11:707767..707786 (20 bp)
TGTATGTACTGAACTTAGATGGACT
NONE
Target Sequence 
GGCATCGAGCCGCAAGGTTTTTGTCATATTAATCATGGTGCTTAGCAAGGTTGAAGTGAACTTGATAAGGCTGCTTGAGG
CAGCTCCTCGACAGCAGAACCAGACTAAGCTTGTCCATTATGTAACCACAGCCAGGGAACTGTTGGAGCAGCTAGGATCA
GAAACTACTCTAGAAGGGATATCAAGTGTATCAAAAGCTAAGACAAGTGAGTATTCAGAAAAGATTGAAGCATTGGCTGC
CCGGCTTGCTGCTCCAGAGCCAGAAAATGAAATGCCAGTTGATGAGAATAGAGAGGTAGAAAGCTCTTATGAAGGAGATA
AGCCAGGAAGTCCAATATCATTATCATCAGGATTACGTAGGAGACCAATGTAAGTTTTAAAATTTGTATGTTTCTTTTTC
ATAATTATTACAATTAGCGAGCTAATAATGGATGTAAATTGTATGTTCTTTTACATATGTTTGATGAATTGTAACTGAAC
ACATTTATCTTTTCTATGGACCCTTTGTATATTACTAAATCCGGTTTGAATGAATTTGTATGTACTGAACTTAGATGGAC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis