Browse Element(s) Details


Os.52359.1.S1_at

Description gb:AK105065.1
DB_XREF= gi:32990274
TID=Os.52359.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-F05, full insert sequence.
FL= gb:AK105065.1 gb:AK066644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1773011/11prephenate dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17690Os.12723.1.S1_at9/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17690OsAffx.18972.1.S1_at1/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17700Os.406.1.S1_a_at11/113+9826769..9829502Mitogen-activated protein kinase homolog 6, putative, expressed
LOC_Os03g17710Os.8079.1.S1_at11/113+9831821..9835072RNA recognition motif family protein, expressed
LOC_Os03g17720OsAffx.25125.1.S1_at11/113+9839501..9839923hypothetical protein
LOC_Os03g17730Os.52359.1.S1_at11/113+9842895..9847697prephenate dehydratase family protein, expressed
LOC_Os03g17740Os.10761.1.S1_at11/113+9851299..9855629plastidic phosphate translocator-like protein2, putative, expressed
LOC_Os03g17750OsAffx.12901.1.S1_at11/113+9856054..9856442hypothetical protein
LOC_Os03g17760Os.14770.1.S1_at11/113+9857077..9859981RNA recognition motif family protein, expressed
LOC_Os03g17770OsAffx.30237.2.S1_x_at11/113+9869463..9870476hypothetical protein
LOC_Os03g17780Os.25009.1.A1_at11/113+9872475..9875649WD domain containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009094biological_processL-phenylalanine biosynthesis
GO:0004664molecular_functionprephenate dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52359.1.S1_at--468--1511Chr03:9846101..9846125 (25 bp)
AGCACCTTCTGCATATCACATGCTA
LOC_Os03g17730
Os.52359.1.S1_at--777--10731Chr03:9847164..9847188 (25 bp)
TTGAGCGTGGGCTGTCAATTTCACA
LOC_Os03g17730
Os.52359.1.S1_at--704--1111Chr03:9847344..9847368 (25 bp)
AGTGATATACTTACCACCATCCATG
LOC_Os03g17730
Os.52359.1.S1_at--312--571Chr03:9847362..9847386 (25 bp)
ATCCATGCCCTATAGTCCTTATGTT
LOC_Os03g17730
Os.52359.1.S1_at--649--6951Chr03:9847479..9847503 (25 bp)
GTAGAACAATTTCGCTCGTTCCCAG
LOC_Os03g17730
Os.52359.1.S1_at--920--7971Chr03:9847505..9847529 (25 bp)
GGATGCGCTGGTCAAACCCTTCAGT
LOC_Os03g17730
Os.52359.1.S1_at--66--4931Chr03:9847532..9847556 (25 bp)
GCTTGCCACCCAACTGTTGTATTTT
LOC_Os03g17730
Os.52359.1.S1_at--19--6891Chr03:9847550..9847574 (25 bp)
GTATTTTCTTGTCCTGTATGTGCTC
LOC_Os03g17730
Os.52359.1.S1_at--950--6911Chr03:9847565..9847589 (25 bp)
GTATGTGCTCATGGACTCTTAGTCG
LOC_Os03g17730
Os.52359.1.S1_at--1138--3751Chr03:9847580..9847604 (25 bp)
CTCTTAGTCGTGAGCTCGTAGCAGA
LOC_Os03g17730
Os.52359.1.S1_at--964--6491Chr03:9847603..9847627 (25 bp)
GATAGTTCAATCATGTTTCCCTCGT
LOC_Os03g17730
Target Sequence 
AGCACCTTCTGCATATCACATGCTAGATTACCAGGGATGGATTGAGCGTGGGCTGTCAATTTCACAGCGAGTTGGGAAGT
CATCAATAATTTCTAGACTGATGCTAATTTGAAGAGCAATAAAGCATATCCATGTATTATCGGCAAGGAAGCTGCATGTG
ACTTGGTTAGAAGATGGAAAAGAACAAAATAGTGGGTTTTACGTTTTACTAAGAGCTTTATAGTGATATACTTACCACCA
TCCATGCCCTATAGTCCTTATGTTGTAACTTATGTTCTTCTAAGCAATCATGTTCAACAGAGGTAGAGCTCAAAGGGTTG
AATGTTTGGTAGGTGCCGGTGGTTATAGGTAGTGGTGTAGAACAATTTCGCTCGTTCCCAGGGGATGCGCTGGTCAAACC
CTTCAGTCGGCTTGCCACCCAACTGTTGTATTTTCTTGTCCTGTATGTGCTCATGGACTCTTAGTCGTGAGCTCGTAGCA
GATAGTTCAATCATGTTTCCCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis