Browse Element(s) Details


Os.52378.1.S1_at

Description gb:AK066723.1
DB_XREF= gi:32976741
TID=Os.52378.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088A01, full insert sequence.
FL= gb:AK066723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4372011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43660NANA7+26136365..26138666hypothetical protein
LOC_Os07g43670Os.6651.1.S1_at11/117+26139774..26141226Ribonuclease T2 family protein, expressed
LOC_Os07g43690OsAffx.28889.1.S1_at11/117+26147326..26150405hypothetical protein
LOC_Os07g43700Os.17814.2.S1_x_at11/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43700OsAffx.30978.1.S1_at1/117+26152130..26154311Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os07g43710Os.8080.2.S1_x_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43710Os.8080.1.S1_at11/117+26156655..26161837glycosyltransferase 5, putative, expressed
LOC_Os07g43720Os.52378.1.S1_at11/117+26162000..26166374expressed protein
LOC_Os07g43730OsAffx.16702.1.S1_at11/117+26168256..26170858expressed protein
LOC_Os07g43730Os.10158.1.S1_at10/117+26168256..26170858expressed protein
LOC_Os07g43740Os.41109.1.S1_x_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43740Os.41109.1.S1_at11/117+26171900..26172686Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g43750NANA7+26174883..26180507retrotransposon protein, putative, unclassified
LOC_Os07g43760Os.28943.1.S1_x_at2/117+26181136..26184015retrotransposon protein, putative, unclassified
LOC_Os07g43770Os.12208.1.S1_at11/117+26186433..26188309expressed protein
LOC_Os07g43770OsAffx.5627.1.S1_at11/117+26186433..26188309expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52378.1.S1_at--620--9731Chr07:26162537..26162561 (25 bp)
TAATTTTACGCGCTCAGTCCATCTT
LOC_Os07g43720
Os.52378.1.S1_at--1089--971Chr07:26162493..26162517 (25 bp)
AGGAGAGCCCTGTCATTACTAAGTA
LOC_Os07g43720
Os.52378.1.S1_at--772--9891Chr07:26162444..26162468 (25 bp)
TACTCCTTTGGTTCACAGTCCATCA
LOC_Os07g43720
Os.52378.1.S1_at--346--6151Chr07:26162385..26162409 (25 bp)
GAGGTTGTCTTCAGAACTCACCTTC
LOC_Os07g43720
Os.52378.1.S1_at--854--5471Chr07:26162372..26162396 (25 bp)
GAACTCACCTTCTATCGTCGAAGAT
LOC_Os07g43720
Os.52378.1.S1_at--528--7811Chr07:26162185..26162208 (24 bp)
GGTCTGTACCCTAATGATGCCATTA
LOC_Os07g43720
Os.52378.1.S1_at--877--6351Chr07:26162170..26162194 (25 bp)
GATGCCATTATGTACTTGAGACGAA
LOC_Os07g43720
Os.52378.1.S1_at--1146--2551Chr07:26162137..26162161 (25 bp)
AACTGACGTCTCTGCTGTAACTGAA
LOC_Os07g43720
Os.52378.1.S1_at--490--5711Chr07:26162112..26162136 (25 bp)
GACTGTAACCCTTTCTTGTAGATCA
LOC_Os07g43720
Os.52378.1.S1_at--470--1251Chr07:26162093..26162117 (25 bp)
AGATCATTCCTTCTACCGTTTTATC
LOC_Os07g43720
Os.52378.1.S1_at--27--5491Chr07:26162048..26162072 (25 bp)
GAACTTTGTATTGGGCACACTGCAA
LOC_Os07g43720
Target Sequence 
TAATTTTACGCGCTCAGTCCATCTTGCGCCTCTGAAACGGCTGAAGGAGAGCCCTGTCATTACTAAGTATGGAGTTTGGG
AATACAATGCAGGTACTCCTTTGGTTCACAGTCCATCAGATTATTGTGATGATGCAAATTTGCACAACCCAAGAGGTTGT
CTTCAGAACTCACCTTCTATCGTCGAAGATTGTTTGTCAAAAGGATTTGAAGGTTGCATTTCAATGAAATGCTCGTTTTA
ATATAATCAGGAATACATGGCTTATTCACAATGACAGTCCATAAACTTCATGATTTTCCAGTGTGAGCATTCTGTATCTG
TAATTAGTCAATTTTTGACTGGTAATATTATTGGTCTGTACCCTAATGATGCCATTATGTACTTGAGACGAAATATGTGC
AACTGACGTCTCTGCTGTAACTGAAGACTGTAACCCTTTCTTGTAGATCATTCCTTCTACCGTTTTATCTTGCCTGATAG
GTAATGTTAGAACTTTGTATTGGGCACACTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis