Browse Element(s) Details

Os.52389.1.S1_x_at

Description

gb:AK068804.1
DB_XREF= gi:32978829
TID=Os.52389.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52389 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013161L13, full insert sequence.
FL= gb:AK068804.1 gb:AK098965.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g01790	11/11	expressed protein
LOC_Os03g47749	3/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g01730	OsAffx.29607.2.S1_s_at	11/11	6	+	425064..429602	hypothetical protein
LOC_Os06g01740	NA	NA	6	+	429838..433798	hypothetical protein
LOC_Os06g01750	OsAffx.14351.1.S1_x_at	2/11	6	+	436156..437133	hypothetical protein
LOC_Os06g01760	Os.12825.1.S1_at	11/11	6	+	438061..440552	expressed protein
LOC_Os06g01770	Os.4441.1.S1_at	11/11	6	+	443998..446785	expressed protein
LOC_Os06g01780	Os.52860.1.A1_at	11/11	6	+	449988..452733	expressed protein
LOC_Os06g01790	Os.52389.1.S1_x_at	11/11	6	+	453863..456206	expressed protein
LOC_Os06g01800	OsAffx.15220.1.S1_s_at	11/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	Os.55780.1.S1_at	10/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	OsAffx.15220.2.S1_s_at	8/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	Os.48472.1.A1_at	7/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01800	OsAffx.14814.1.S1_at	1/11	6	+	457997..464513	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g01810	NA	NA	6	+	465385..466183	hypothetical protein
LOC_Os06g01820	OsAffx.10379.1.A1_at	2/11	6	+	469319..470927	hypothetical protein
LOC_Os06g01820	Os.51646.1.S1_at	1/11	6	+	469319..470927	hypothetical protein
LOC_Os06g01830	OsAffx.15222.1.S1_at	9/11	6	+	472151..472577	hypothetical protein
LOC_Os06g01840	Os.12745.1.S1_at	11/11	6	+	476099..478173	Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01850	Os.10696.1.S1_at	11/11	6	+	478199..480658	Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52389.1.S1_x_at--1158--599	1	Chr06:455655..455679 (25 bp)	GAGACCATCGCGCTGATCCTGATGC	LOC_Os06g01790
Os.52389.1.S1_x_at--51--57	2	Chr06:455670..455694 (25 bp)	ATCCTGATGCAGGTGTTCTTCACGG	LOC_Os06g01790
Os.52389.1.S1_x_at--448--879	1	Chr06:455683..455707 (25 bp)	TGTTCTTCACGGTGGTGGGCGCCAA	LOC_Os06g01790
Os.52389.1.S1_x_at--930--515	2	Chr06:455710..455734 (25 bp)	GCAACCTGGTGGACGCGGTGACCAA	LOC_Os06g01790
Os.52389.1.S1_x_at--1037--293	2	Chr06:455733..455757 (25 bp)	AAGGCGCCCAGCGTGTTCGCGTTCG	LOC_Os06g01790
Os.52389.1.S1_x_at--996--933	1	Chr06:455749..455773 (25 bp)	TCGCGTTCGCGCTGGTGCAAGTGAC	LOC_Os06g01790
Os.52389.1.S1_x_at--1093--859	1	Chr06:455761..455785 (25 bp)	TGGTGCAAGTGACCATCCACCTAGG	LOC_Os06g01790
Os.52389.1.S1_x_at--700--1009	1	Chr06:455782..455806 (25 bp)	TAGGCATCGTGCTCGCCGCAGGGAA	LOC_Os06g01790
Os.52389.1.S1_x_at--216--819	1	Chr06:455824..455848 (25 bp)	GGAAGCCGCTGCTGATCGCGTCCAA	LOC_Os06g01790
Os.52389.1.S1_x_at--237--863	2	Chr06:455929..455953 (25 bp)	TGGTGGGCATGTTCGGGATCTCCAT	LOC_Os06g01790
Os.52389.1.S1_x_at--1030--765	1	Chr06:455943..455967 (25 bp)	GGGATCTCCATTGCCACGTTTGTTG	LOC_Os06g01790

Target Sequence

GAGACCATCGCGCTGATCCTGATGCAGGTGTTCTTCACGGTGGTGGGCGCCAACGGCAACCTGGTGGACGCGGTGACCAA
GGCGCCCAGCGTGTTCGCGTTCGCGCTGGTGCAAGTGACCATCCACCTAGGCATCGTGCTCGCCGCAGGGAAGCTGATGG
GGTTCGAGCGGAAGCCGCTGCTGATCGCGTCCAACGCCAACGTGGGCGGGCCGACGACGGCGGCGGCCATGGCGACGGCC
AAGGGGTGGAGCTCGCTGATCGTGCCGGGCATCCTGGTGGGCATGTTCGGGATCTCCATTGCCACGTTTGTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis