Browse Element(s) Details


Os.52399.1.S1_x_at

Description gb:AK066872.1
DB_XREF= gi:32976890
TID=Os.52399.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013084C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013084C07, full insert sequence.
FL= gb:AK066872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3774011/11NB-ARC domain containing protein, expressed
LOC_Os11g377592/11Leucine Rich Repeat family protein, expressed
LOC_Os11g377742/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37710Os.27639.1.S1_x_at5/1111+21788671..21793470transposon protein, putative, unclassified
LOC_Os11g37710OsAffx.8980.1.S1_at1/1111+21788671..21793470transposon protein, putative, unclassified
LOC_Os11g37720OsAffx.31351.1.S1_at10/1111+21800587..21802336Integral membrane protein DUF6 containing protein, expressed
LOC_Os11g37730Os.8664.1.S1_at11/1111+21804438..21808758Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os11g37740Os.52399.1.S1_x_at11/1111+21809643..21817833NB-ARC domain containing protein, expressed
LOC_Os11g37740Os.52997.1.S1_at10/1111+21809643..21817833NB-ARC domain containing protein, expressed
LOC_Os11g37750Os.8664.1.S1_at3/1111+21820257..21823666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g37750Os.26510.1.S1_at1/1111+21820257..21823666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g37759Os.26510.1.S1_at11/1111+21827644..21832741Leucine Rich Repeat family protein, expressed
LOC_Os11g37759Os.52399.1.S1_x_at2/1111+21827644..21832741Leucine Rich Repeat family protein, expressed
LOC_Os11g37759Os.52997.1.S1_at1/1111+21827644..21832741Leucine Rich Repeat family protein, expressed
LOC_Os11g37770NANA11+21838588..21839394retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.52399.1.S1_x_at--600--2512Chr11:21816898..21816922 (25 bp)
AACATAGCACTCACATTTCTTCAAG
LOC_Os11g37740
Os.52399.1.S1_x_at--758--193Chr11:21854226..21854250 (25 bp)
ATTTCTTCAAGGAGCCATGCCGATG
LOC_Os11g37774
Os.52399.1.S1_x_at--1091--591Chr11:21816928..21816952 (25 bp)
ATGCCGATGCTCACGGAGCTTCAAT
LOC_Os11g37740
Os.52399.1.S1_x_at--1088--1551Chr11:21816944..21816968 (25 bp)
AGCTTCAATTCGAGCTGTGGGCCGC
LOC_Os11g37740
Os.52399.1.S1_x_at--133--2551Chr11:21817007..21817031 (25 bp)
AACTCCCTCTGCTCAATTACATTGG
LOC_Os11g37740
Os.52399.1.S1_x_at--84--151Chr11:21817022..21817046 (25 bp)
ATTACATTGGGCTTCTCCTCATGTG
LOC_Os11g37740
Os.52399.1.S1_x_at--1103--7251Chr11:21817121..21817145 (25 bp)
GTCCTGCCACTGTTGTGCATCGAAT
LOC_Os11g37740
Os.52399.1.S1_x_at--894--511Chr11:21817139..21817521 (25 bp)
ATCGAATTGGAAGCACCTGATGAAA
LOC_Os11g37740
Os.52399.1.S1_x_at--1160--4991Chr11:21817624..21817648 (25 bp)
GCATGTGTCGTGCATACCTATTCGA
LOC_Os11g37740
Os.52399.1.S1_x_at--987--91Chr11:21817643..21817667 (25 bp)
ATTCGATCCTGGTCACGCGATATTA
LOC_Os11g37740
Os.52399.1.S1_x_at--290--7892Chr11:21817686..21817710 (25 bp)
GGTTAATTTGTTGCCTGTTTCTATC
LOC_Os11g37740
Target Sequence
AACATAGCACTCACATTTCTTCAAGGAGCCATGCCGATGCTCACGGAGCTTCAATTCGAGCTGTGGGCCGCTGAAGATGG
TGCCGCCGCTGGTGATGTTGGCTTGGGGCAACTCCCTCTGCTCAATTACATTGGGCTTCTCCTCATGTGCACCGGTGCGA
CGGGCAGGCAGGTGGAGGAAGCAGAGGTGGCGTGGAGGCGCATGGTGAATGCTCACCCGAACCGTCCTGCCACTGTTGTG
CATCGAATTGGAAGCACCTGATGAAAGAAGGTGATGATGATGAGGAGATTTCAGCTAGCTAAGGATCACATTGACGAGAA
TGGTGACGACGAGAATTCAGCATATTTGGACCAAGAGGTGCTGCACTTGCATGTGTCGTGCATACCTATTCGATCCTGGT
CACGCGATATTACATGATTTACTGACCATTGGTTAATTTGTTGCCTGTTTCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52399.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis