Browse Element(s) Details


Os.52425.1.S1_x_at

Description gb:AK067023.1
DB_XREF= gi:32977041
TID=Os.52425.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092M02, full insert sequence.
FL= gb:AK067023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2099011/11expressed protein
LOC_Os08g319801/11trehalose-6-phosphate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20960NANA9+12624093..12624368hypothetical protein
LOC_Os09g20970OsAffx.17811.1.S1_x_at11/119+12626179..12628653Leucine Rich Repeat family protein
LOC_Os09g20980OsAffx.29952.1.S1_s_at11/119+12636742..12638370Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g20980Os.57557.1.S1_at11/119+12636742..12638370Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g20990Os.52425.1.S1_x_at11/119+12643733..12649073expressed protein
LOC_Os09g20990OsAffx.29953.1.S1_at11/119+12643733..12649073expressed protein
LOC_Os09g21000Os.53102.1.S1_s_at11/119+12661823..12666522Potassium transporter 12, putative, expressed
LOC_Os09g21010OsAffx.17812.1.S1_at5/119+12670658..12671023hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0004805molecular_functiontrehalose-phosphatase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52425.1.S1_x_at--869--7951Chr09:12645487..12645511 (25 bp)
GGATCAGTCTAAAATTGCTTGGCTT
LOC_Os09g20990
Os.52425.1.S1_x_at--151--2911Chr09:12645425..12645449 (25 bp)
AAGGTTGTCCTTGTGCAGATTATAA
LOC_Os09g20990
Os.52425.1.S1_x_at--1110--2991Chr09:12645359..12645383 (25 bp)
AATGAAGCCGTCTCTGTAGCTGAAA
LOC_Os09g20990
Os.52425.1.S1_x_at--327--6931Chr09:12645321..12645345 (25 bp)
GTATGGTTCTGCTGAGTACAAGCCT
LOC_Os09g20990
Os.52425.1.S1_x_at--837--1171Chr09:12645307..12645331 (25 bp)
AGTACAAGCCTGTCATCCTTATCGA
LOC_Os09g20990
Os.52425.1.S1_x_at--287--2031Chr09:12645283..12645307 (25 bp)
ACTACCCCATACCTTCTTATGAGAA
LOC_Os09g20990
Os.52425.1.S1_x_at--1043--3691Chr09:12645249..12645273 (25 bp)
CTATGCTGCATCTGATTGCTGTATT
LOC_Os09g20990
Os.52425.1.S1_x_at--1148--691Chr09:12645187..12645211 (25 bp)
ATGAGTATACTGTCTGCAGGCAGGG
LOC_Os09g20990
Os.52425.1.S1_x_at--2--3752Chr09:12645123..12645147 (25 bp)
CTCACATCACACAAGCACACTAATT
LOC_Os09g20990
Os.52425.1.S1_x_at--883--7171Chr09:12645096..12645120 (25 bp)
GTCTGAGTTTGTTGGTTGCTCCCCA
LOC_Os09g20990
Os.52425.1.S1_x_at--915--9631Chr09:12645071..12645095 (25 bp)
TCACTTAGTGGTGCTTTCAGGGTAA
LOC_Os09g20990
Target Sequence 
GGATCAGTCTAAAATTGCTTGGCTTGGAATTTCTTTTGGAGAGAACTCCAAAGCTAAGAGGGAAGGTTGTCCTTGTGCAG
ATTATAAATCCTGCAAGAAGCACTGGAAAAGATGTGGAGGAAGCAATAAATGAAGCCGTCTCTGTAGCTGAAAGGATAAA
CATTAAGTATGGTTCTGCTGAGTACAAGCCTGTCATCCTTATCGACTACCCCATACCTTCTTATGAGAAGATTGCATACT
ATGCTGCATCTGATTGCTGTATTGTAAATGCTGTGAGGGATGGGATGAACTTGATACCATATGAGTATACTGTCTGCAGG
CAGGGAAATGAGGAGATTGATAAGCTCAGAGGTGTTGATAAGAGCTCACATCACACAAGCACACTAATTGTGTCTGAGTT
TGTTGGTTGCTCCCCATCACTTAGTGGTGCTTTCAGGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52425.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis