Browse Element(s) Details


Os.52442.1.A1_at

Description gb:AK067175.1
DB_XREF= gi:32977193
TID=Os.52442.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098G13, full insert sequence.
FL= gb:AK067175.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7446010/11SAND family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74410Os.408.1.S1_a_at11/111+43423249..43424821Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74430OsAffx.7575.4.A1_at11/111+43431289..43431711hypothetical protein
LOC_Os01g74440NANA1+43439629..43440255SRF-type transcription factor family protein
LOC_Os01g74450Os.7475.1.S1_at11/111+43442595..43444069Aquaporin TIP1.1, putative, expressed
LOC_Os01g74460Os.52442.1.A1_at10/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74460OsAffx.21919.1.S1_at2/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74470Os.25416.1.A1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_x_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74480Os.18214.1.S1_at11/111+43463088..43464565legumin, putative, expressed
LOC_Os01g74490Os.48758.1.A1_s_at11/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74490Os.28573.1.S1_at10/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74500NANA1+43470565..43473637hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52442.1.A1_at--317--4371Chr01:43447425..43447603 (25 bp)
CCACTGGCTGACAAGAGTCAAGCAA
LOC_Os01g74460
Os.52442.1.A1_at--466--7411Chr01:43447235..43447342 (25 bp)
GTGATATATTGTCTTGCAGTACCAT
LOC_Os01g74460
Os.52442.1.A1_at--2--7151Chr01:43447225..43447332 (25 bp)
GTCTTGCAGTACCATCACTGTTGGG
LOC_Os01g74460
Os.52442.1.A1_at--133--7071Chr01:43447126..43447150 (25 bp)
GTCAATTTTAATTGGTTCCTGTTTG
LOC_Os01g74460
Os.52442.1.A1_at--5--7092Chr11:300717..301015 (25 bp)
GTCAATGCCATTTCGTTTCTTTCAC
NONE
Os.52442.1.A1_at--703--9551Chr01:43447082..43447106 (25 bp)
TCTTTCACTCTATGTATGTTCTTCG
LOC_Os01g74460
Os.52442.1.A1_at--943--6731Chr01:43447065..43447089 (25 bp)
GTTCTTCGTGTAATCTAATCCGTTA
LOC_Os01g74460
Os.52442.1.A1_at--473--9231Chr01:43447052..43447076 (25 bp)
TCTAATCCGTTAGTACCTTTTAGAG
LOC_Os01g74460
Os.52442.1.A1_at--572--10331Chr01:43447034..43447058 (25 bp)
TTTAGAGTTAGTAATTTCCATCGGG
LOC_Os01g74460
Os.52442.1.A1_at--815--3111Chr01:43447022..43447046 (25 bp)
AATTTCCATCGGGATCCATACTCGT
LOC_Os01g74460
Os.52442.1.A1_at--516--491Chr01:43447015..43447039 (25 bp)
ATCGGGATCCATACTCGTTACTGTT
NONE
Target Sequence 
CCACTGGCTGACAAGAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGGAAAACGAAATTTT
CGTATACGGAGAAAGCACCCTTTCCTGGTGATATATTGTCTTGCAGTACCATCACTGTTGGGGAGATATGAGGGATTAGG
TTTGTATAACATTTTCACTAAAGTCANTGATTTTATTTGCTACCCAGGGNTATTTCATGTCAATTTTAATTGGTTCCTGT
TTGTTGTCAATGCCATTTCGTTTCTTTCACTCTATGTATGTTCTTCGTGTAATCTAATCCGTTAGTACCTTTTAGAGTTA
GTAATTTCCATCGGGATCCATACTCGTTACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52442.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis