Browse Element(s) Details


Os.52475.1.S1_at

Description gb:AK067369.1
DB_XREF= gi:32977387
TID=Os.52475.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104D22, full insert sequence.
FL= gb:AK067369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5724010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57210Os.9472.1.S1_at11/113+32563547..32566812expressed protein
LOC_Os03g57220Os.12394.1.S1_at10/113+32567478..32571470expressed protein
LOC_Os03g57230OsAffx.3630.1.S1_at10/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.23380.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.20851.1.A1_x_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230OsAffx.5035.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57230Os.55580.1.S1_at1/113+32571688..32572681hypothetical protein
LOC_Os03g57240Os.52475.1.S1_at10/113+32584630..32585843expressed protein
LOC_Os03g57240Os.52475.1.S1_x_at10/113+32584630..32585843expressed protein
LOC_Os03g57260Os.49626.1.S1_at11/113+32595020..32599572GRF zinc finger family protein, expressed
LOC_Os03g57270Os.56313.1.S1_at11/113+32601197..32602746expressed protein
LOC_Os03g57280Os.14753.1.S1_at10/113+32604929..32610102N-dimethylguanosine tRNA methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52475.1.S1_at--708--1351Chr03:32585200..32585224 (25 bp)
AGAGCGGCGTGCAGGTGCCCCGGTT
LOC_Os03g57240
Os.52475.1.S1_at--297--1511Chr03:32585164..32585188 (25 bp)
AGCACCATCTCCTGGCGGTGGTGAG
LOC_Os03g57240
Os.52475.1.S1_at--285--5671Chr03:32585087..32585111 (25 bp)
GACATGATCGACATGCTCAACTGGA
LOC_Os03g57240
Os.52475.1.S1_at--397--6391Chr03:32585082..32585106 (25 bp)
GATCGACATGCTCAACTGGAGGCGA
LOC_Os03g57240
Os.52475.1.S1_at--97--2111Chr03:32585077..32585101 (25 bp)
ACATGCTCAACTGGAGGCGAGGCTC
LOC_Os03g57240
Os.52475.1.S1_at--737--9711Chr03:32585071..32585095 (25 bp)
TCAACTGGAGGCGAGGCTCCCACGG
LOC_Os03g57240
Os.52475.1.S1_at--599--1591Chr03:32584939..32584963 (25 bp)
AGCTCGACCTCAACTTGAGCCTCTA
LOC_Os03g57240
Os.52475.1.S1_at--864--3211Chr03:32584861..32584885 (25 bp)
CAAGAAGGCAAGGTCAATCAATCGC
LOC_Os03g57240
Os.52475.1.S1_at--96--6771Chr03:32584654..32584678 (25 bp)
GTTAATGTTAGTACTCCTTGTAATC
LOC_Os03g57240
Os.52475.1.S1_at--1005--6991Chr03:32584644..32584668 (25 bp)
GTACTCCTTGTAATCGATCAATCAG
LOC_Os03g57240
Os.52475.1.S1_at--423--4051Chr03:32584630..32584654 (25 bp)
CGATCAATCAGTCCTCTTTTTTTGC
NONE
Target Sequence 
AGAGCGGCGTGCAGGTGCCCCGGTTCGCGACGCACCAGCACCATCTCCTGGCGGTGGTGAGCAGCGGGCGCGCGATGCTG
GCGGCGCCCGACCAGCCGGGCGCCGGGCGCGACGACATGATCGACATGCTCAACTGGAGGCGAGGCTCCCACGGCCCCAC
CGCCTCCGCCGCCGCCACCACGCCCTCCCCGGCAAGCACCACCACCACGCTCACCACCTTCGCCAGCGCCGACGGCAGCA
ACAACGGCGAGGAGAACGAGGAGCTCGACCTCAACTTGAGCCTCTAGCTCCCACCACCACCACCTCCTCCTCCGCCGCCG
CCGCCGCCGCCGCGCAATCCAAGAAGGCAAGGTCAATCAATCGCCATGTTCTTCTTCTCCAAGCTCCACCTACTCCTCTT
CCAATTCCTCCTCGTGTGTGATTAATCCCCCTCTTCTTGCTGCCTGCGTACGTACTCCTTAATTAATTAGCTCTTAGGGA
CGTTAATTAATCTCAGTTCTTGGCTCTCTTCTCCTCTCCTCTCCTCTCCTCTCATCTCACTTGTATGTTAATGTTAGTAC
TCCTTGTAATCGATCAATCAGTCCTCTTTTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis