Browse Element(s) Details


Os.5248.1.S1_s_at

Description gb:AK068186.1
DB_XREF= gi:32978204
TID=Os.5248.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134H18, full insert sequence.
FL= gb:AK068186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5788011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57880OsAffx.26649.1.S1_x_at11/114+34270867..34272973DnaJ domain containing protein, expressed
LOC_Os04g57880Os.5248.1.S1_s_at11/114+34270867..34272973DnaJ domain containing protein, expressed
LOC_Os04g57890Os.6190.1.S1_at11/114+34273015..34277438Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os04g57900OsAffx.4203.1.S1_at11/114+34279535..34281397expressed protein
LOC_Os04g57910NANA4+34282546..34284098transposon protein, putative, unclassified
LOC_Os04g57920OsAffx.14483.1.S1_at11/114+34286654..34294205F-box domain containing protein, expressed
LOC_Os04g57930OsAffx.14459.1.S1_at10/114+34294528..34296238Thioredoxin X, chloroplast precursor, putative, expressed
LOC_Os04g57940Os.54664.1.S1_at11/114+34296348..34298447pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5248.1.S1_s_at--505--8531Chr04:34272375..34272399 (25 bp)
TGGACTCCGCAGCTGAACCTGCCGT
LOC_Os04g57880
Os.5248.1.S1_s_at--231--4091Chr04:34272420..34272444 (25 bp)
CGACCTCACCGGAGGCAGAGCGCTT
LOC_Os04g57880
Os.5248.1.S1_s_at--60--4531Chr04:34272627..34272651 (25 bp)
GCCGCTCTGGGTCTCGTGAACAGCT
LOC_Os04g57880
Os.5248.1.S1_s_at--809--7151Chr04:34272637..34272661 (25 bp)
GTCTCGTGAACAGCTTCGAGCTCAA
LOC_Os04g57880
Os.5248.1.S1_s_at--19--2811Chr04:34272660..34272684 (25 bp)
AAGATCGTCCTAGCCTCCGTGACAT
LOC_Os04g57880
Os.5248.1.S1_s_at--612--9991Chr04:34272670..34272694 (25 bp)
TAGCCTCCGTGACATGGTTCATCAT
LOC_Os04g57880
Os.5248.1.S1_s_at--185--4251Chr04:34272676..34272700 (25 bp)
CCGTGACATGGTTCATCATCGGCGC
LOC_Os04g57880
Os.5248.1.S1_s_at--693--491Chr04:34272693..34272717 (25 bp)
ATCGGCGCGGCGATTGCCGGATTCA
LOC_Os04g57880
Os.5248.1.S1_s_at--301--6591Chr04:34272704..34272728 (25 bp)
GATTGCCGGATTCATTCAGTTTCTC
LOC_Os04g57880
Os.5248.1.S1_s_at--796--111Chr04:34272713..34272737 (25 bp)
ATTCATTCAGTTTCTCGCGAGGAGC
LOC_Os04g57880
Os.5248.1.S1_s_at--6--9351Chr04:34272727..34272751 (25 bp)
TCGCGAGGAGCGAAGTGAACTTCAG
LOC_Os04g57880
Target Sequence 
TGGACTCCGCAGCTGAACCTGCCGTCCCTAGCATCGCCGCCGGAGCGACCTCACCGGAGGCAGAGCGCTTCTCCTCCCCG
CAGCCAGACGCGGCGAGCAACCCCCACCGGCGATGGCGGGGTGACATTGGGCAGCATCGACCTGACGGCGCCGCTGCTGA
TGGCGATCATCTCGGCCGGGTTCGTGGGTTACAACAGGGAGGAGGTGGCCGGAGTCGGCGGCGGCGGCATCCAGGAGCAC
GTCGGTGGCGCCGCCGCTCTGGGTCTCGTGAACAGCTTCGAGCTCAAGATCGTCCTAGCCTCCGTGACATGGTTCATCAT
CGGCGCGGCGATTGCCGGATTCATTCAGTTTCTCGCGAGGAGCGAAGTGAACTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5248.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis