Browse Element(s) Details


Os.52519.1.S1_at

Description gb:AK067633.1
DB_XREF= gi:32977651
TID=Os.52519.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111A10, full insert sequence.
FL= gb:AK067633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g045705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04490NANA12+1911221..1912258hypothetical protein
LOC_Os12g04500Os.37430.1.S1_at5/1112+1914875..1916596Two-component response regulator ARR8, putative, expressed
LOC_Os12g04510Os.9249.1.S1_at10/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04510Os.37965.1.S1_at1/1112+1916846..1919667RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os12g04520Os.18691.1.S1_at5/1112+1921577..1925626mitochondrial L-galactono-1,4-lactone dehydrogenase, putative
LOC_Os12g04530OsAffx.19491.1.S1_at11/1112+1925876..1927095hypothetical protein
LOC_Os12g04540OsAffx.30819.1.S1_at11/1112+1928974..1930164hypothetical protein
LOC_Os12g04550OsAffx.22355.1.S1_at1/1112+1931308..1932151retrotransposon protein, putative, unclassified
LOC_Os12g04560OsAffx.19494.1.S1_at5/1112+1932481..1932809Calmodulin, putative
LOC_Os12g04570OsAffx.31579.1.S1_at10/1112+1933614..1935143hypothetical protein
LOC_Os12g04570Os.52519.1.S1_at5/1112+1933614..1935143hypothetical protein
LOC_Os12g04580OsAffx.19494.1.S1_at5/1112+1936309..1936617Calmodulin-related protein 97A, putative
LOC_Os12g04590Os.40368.1.A1_s_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590OsAffx.31580.1.S1_x_at11/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04590Os.55645.1.S1_at4/1112+1938006..1940120Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g04610Os.54131.1.S1_at10/1112+1948575..1951619expressed protein
LOC_Os12g04620OsAffx.19542.3.S1_x_at5/1112+1955881..1959402retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52519.1.S1_at--587--891Chr11:2042501..2042525 (25 bp)
AGGCCCCTCGGACTGTTAATTGATT
NONE
Os.52519.1.S1_at--833--113Chr12:1937884..1937903 (20 bp)
ATTCTCGCGGAATCAGTGCTTGTTT
NONE
Os.52519.1.S1_at--464--9813Chr12:1937903..1937922 (20 bp)
TAACTGATCAATGTCGTGGCGTGCA
NONE
Os.52519.1.S1_at--266--5153Chr12:1933924..1933948 (25 bp)
GCAACAAATCTGCATTTCTCTGAAA
LOC_Os12g04570
Os.52519.1.S1_at--360--2472Chr12:1933956..1933977 (22 bp)
AACAAACCTGCTACTCTCTGAATAA
LOC_Os12g04570
Os.52519.1.S1_at--1156--5212Chr12:1933981..1934005 (25 bp)
GAATTTTTTGTCTCCAGTTTTCCTG
LOC_Os12g04570
Os.52519.1.S1_at--247--1232Chr12:1933995..1934019 (25 bp)
CAGTTTTCCTGGGAATCCCTTATGG
LOC_Os12g04570
Os.52519.1.S1_at--232--9231Chr11:2042691..2042715 (25 bp)
TCCAGTTATCTGTGAATCCCTTATG
NONE
Os.52519.1.S1_at--52--7192Chr12:1935748..1935772 (25 bp)
GTCTGTAATAGCTCTTTGGGTCTTA
NONE
Os.52519.1.S1_at--473--6771Chr11:2042944..2042968 (25 bp)
GTTACAGCCGGTGATGATTGTTATC
NONE
Os.52519.1.S1_at--1002--6952Chr12:1935956..1935979 (24 bp)
GTAGCTATGCCTATTTTCATTGTAT
NONE
Target Sequence 
AGGCCCCTCGGACTGTTAATTGATTGAATGAATTCTCGCGGAATCAGTGCTTGTTTAACTGATCAATGTCGTGGCGTGCA
ACAAATCTGCATTTCTCTGAAAATTGCAACAAACCTGCTACTCTCTGAATAATCTGAATTTTTTGTCTCCAGTTTTCCTG
GGAATCCCTTATGGAATATTTCTTTTTGTCTCCAGTTATCTGTGAATCCCTTATGGAAATTTGTAACCGGATGTTTAAAT
TCACATAGTTATATATATTTACTTCTGCTTTCTTGATATTCAGTTCAATGTCTGTAATAGCTCTTTGGGTCTTAGTATAT
GTTAGCCTGGTTTTCTTGGGCCAAGCCAATAAGAGAAACAAAAGGGATCAACAGATTTGAGAATTCGTAATTCAGTGTAT
ATATAGTTCCTGAAAATAATTCAGGGAGGGTGTCCATAAAAATGTTACAGCCGGTGATGATTGTTATCATTTTTTTTTAA
AAGTAGCTATGCCTATTTTCATTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis