Browse Element(s) Details


Os.52560.1.S1_at

Description gb:AK067994.1
DB_XREF= gi:32978012
TID=Os.52560.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123J15, full insert sequence.
FL= gb:AK067994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0782011/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07780NANA3+3930706..3933929transposon protein, putative, unclassified
LOC_Os03g07790Os.18122.1.S1_at11/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g07790Os.16379.1.S1_at1/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g07800Os.49223.1.S1_at11/113+3949327..3953619RNA recognition motif family protein, expressed
LOC_Os03g07810Os.51089.1.S1_at11/113+3954068..3956526expressed protein
LOC_Os03g07820Os.52560.1.S1_at11/113+3957779..3962643exostosin family protein, putative, expressed
LOC_Os03g07830OsAffx.12772.1.S1_at11/113+3964011..3964967AP2 domain containing protein
LOC_Os03g07840Os.8295.1.S1_at11/113+3965867..3969105Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g07850Os.11726.2.S1_x_at11/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.53180.1.S1_at4/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07850Os.41415.1.S1_at1/113+3969222..3976868tRNA methyl transferase family protein, expressed
LOC_Os03g07870OsAffx.12773.1.S1_at11/113+3978590..3980770hypothetical protein
LOC_Os03g07880Os.3426.1.S1_at11/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g07880Os.3426.2.S1_x_at8/113+3981120..3984531CCAAT-binding transcription factor subunit B family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52560.1.S1_at--294--6891Chr03:3961763..3961787 (25 bp)
GTATGTGTTTGCATTAACTCCCCTT
LOC_Os03g07820
Os.52560.1.S1_at--832--3311Chr03:3961809..3961833 (25 bp)
CACATACTTGGTGTTTCCATCTCAC
LOC_Os03g07820
Os.52560.1.S1_at--111--6731Chr03:3961896..3961920 (25 bp)
GTTCTTCTACCGTGACTCTATATTG
LOC_Os03g07820
Os.52560.1.S1_at--704--6271Chr03:3962002..3962026 (25 bp)
GATGTCTTCGCTACTTTCATACAGG
LOC_Os03g07820
Os.52560.1.S1_at--803--151Chr03:3962266..3962290 (25 bp)
ATTATACATTGACCCTTGGCGGCAA
LOC_Os03g07820
Os.52560.1.S1_at--480--8391Chr03:3962282..3962306 (25 bp)
TGGCGGCAAGGTGTCCTCCAAAGAA
LOC_Os03g07820
Os.52560.1.S1_at--192--931Chr03:3962307..3962331 (25 bp)
AGGAAACCGGGTTGCCTGACATCTG
LOC_Os03g07820
Os.52560.1.S1_at--275--5671Chr03:3962324..3962348 (25 bp)
GACATCTGCTCGAAAGCTTCCTGAA
LOC_Os03g07820
Os.52560.1.S1_at--457--1711Chr03:3962464..3962488 (25 bp)
ACCTTTGGTAGTTCATTTCTTCCAG
LOC_Os03g07820
Os.52560.1.S1_at--772--4191Chr03:3962506..3962530 (25 bp)
CCCCAGGCCATTTTCTGTAAGGATA
LOC_Os03g07820
Os.52560.1.S1_at--264--1191Chr03:3962539..3962563 (25 bp)
AGTACCTTGCTTTCTTGATTCGGAA
LOC_Os03g07820
Target Sequence 
GTATGTGTTTGCATTAACTCCCCTTTCGTTCGGTTATAACTTTTGACACATACTTGGTGTTTCCATCTCACCAGGGGATA
AACGAAACACAAGTAGAGTTCATGTTGAGAAATGTGCGCCAGATATGGCAGAGGTTCTTCTACCGTGACTCTATATTGCT
AGAGGCTCAAAGGCAGAAAAGATTATTCTCTGAGGAGGCACCGTGGTCTGTTGAGGTGTCAAAACTAGACAAGGTTGATG
ATGTCTTCGCTACTTTCATACAGGTATTGCATTACAAATTATACATTGACCCTTGGCGGCAAGGTGTCCTCCAAAGAAAG
GAAACCGGGTTGCCTGACATCTGCTCGAAAGCTTCCTGAAATGTCTGGCAGACACTACAAATGTAAAGCTAAGATAGGCA
TATATGTAGTTCTAGATTCCTAGAAAGTGACCTATTACCTATAAATTCTGTTACATTCAGGAAGATTCAAACGTTACCTT
TGGTAGTTCATTTCTTCCAGAGTTTTGTCAGATTGACCCCCAGGCCATTTTCTGTAAGGATAATAGCAATAGTACCTTGC
TTTCTTGATTCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis