Browse Element(s) Details


Os.52579.1.S1_at

Description gb:AK068142.1
DB_XREF= gi:32978160
TID=Os.52579.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023094P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134C08, full insert sequence.
FL= gb:AK071483.1 gb:AK068142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2207011/11Mitochondrial glycoprotein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22050OsAffx.4897.1.S1_at11/116+12780812..12781501hypothetical protein
LOC_Os06g22060Os.5654.1.S1_at11/116+12793243..12799337Pyrophosphate-fructose 6-phosphate 1-phosphotransferase alpha subunit, putative, expressed
LOC_Os06g22070Os.52579.1.S1_at11/116+12800433..12803022Mitochondrial glycoprotein, expressed
LOC_Os06g22080Os.12534.1.S1_s_at11/116+12808651..12811488mono- or diacylglycerol acyltransferase, putative, expressed
LOC_Os06g22080Os.17280.1.A1_at10/116+12808651..12811488mono- or diacylglycerol acyltransferase, putative, expressed
LOC_Os06g22090Os.31911.1.S1_at1/116+12813795..12819941retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22090Os.41248.4.S1_x_at1/116+12813795..12819941retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g22100OsAffx.15547.1.S1_at11/116+12824827..12826244expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52579.1.S1_at--8--8651Chr06:12802243..12802542 (25 bp)
TGGGACCGACATTTCAGGATCTTGA
LOC_Os06g22070
Os.52579.1.S1_at--753--5291Chr06:12802555..12802579 (25 bp)
GAAGGCCTTGCACCGGTATCTCGAA
LOC_Os06g22070
Os.52579.1.S1_at--598--8211Chr06:12802586..12802610 (25 bp)
GGAATCAAGCACTCACTGCATGACT
LOC_Os06g22070
Os.52579.1.S1_at--844--9051Chr06:12802602..12802626 (25 bp)
TGCATGACTGGCTGTGCGAGTACAT
LOC_Os06g22070
Os.52579.1.S1_at--873--1131Chr06:12802693..12802717 (25 bp)
AGTGCCGGTGCGTAATGTTTGTCCC
LOC_Os06g22070
Os.52579.1.S1_at--832--8771Chr06:12802708..12802732 (25 bp)
TGTTTGTCCCTCATAATTATCCAGA
LOC_Os06g22070
Os.52579.1.S1_at--277--7131Chr06:12802786..12802810 (25 bp)
GTCATAAATCCTTGCTGCTGTTACC
LOC_Os06g22070
Os.52579.1.S1_at--899--6771Chr06:12802805..12802829 (25 bp)
GTTACCCAGCACTGTTTGCTACTAG
LOC_Os06g22070
Os.52579.1.S1_at--142--1571Chr06:12802828..12802852 (25 bp)
AGCTAGCTCGCCTTTTATTTAATCC
LOC_Os06g22070
Os.52579.1.S1_at--885--351Chr06:12802929..12802953 (25 bp)
ATAATTTCAACGTGCTGTCTCCACA
LOC_Os06g22070
Os.52579.1.S1_at--347--10411Chr06:12802967..12802991 (25 bp)
TTATTCTGTTTTGTGCATTCGTGCA
LOC_Os06g22070
Target Sequence 
TGGGACCGACATTTCAGGATCTTGATGAGAGCTTGCAGAAGGCCTTGCACCGGTATCTCGAAGTGAGGGGAATCAAGCAC
TCACTGCATGACTGGCTGTGCGAGTACATGATGAGCAAGGATGAGAAGGAGTATCTGGTTTGGTTGAAGAGCATGAAAGA
ATTCGTTGGGAATTGAGTGCCGGTGCGTAATGTTTGTCCCTCATAATTATCCAGAGCTACATTGCATAGAAGTCACGTTT
GGTGAAAGACCATATGGTGGTTTTATTTGTCATAAATCCTTGCTGCTGTTACCCAGCACTGTTTGCTACTAGCTAGCTCG
CCTTTTATTTAATCCCTTTGATCTTTGGATGATTGTGATTATTTTGCTCTTGTGCGTGGAGTTTTTGAGTACTTACTGTC
GAAGTGTCATCATAATTTCAACGTGCTGTCTCCACACCTTCTCCAGAAATTATTCTGTTTTGTGCATTCGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis