Browse Element(s) Details


Os.52672.1.S1_at

Description gb:AK068711.1
DB_XREF= gi:32978728
TID=Os.52672.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160C06, full insert sequence.
FL= gb:AK068711.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1613011/11fiber protein Fb34, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16080Os.47463.1.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16080Os.14491.2.S1_x_at3/118+9797946..9801646transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16090Os.46053.2.S1_x_at9/118+9803917..9807149transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16100NANA8+9808727..9812059transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16110OsAffx.17021.1.S1_at11/118+9813896..9815277hypothetical protein
LOC_Os08g16110OsAffx.11470.1.S1_at1/118+9813896..9815277hypothetical protein
LOC_Os08g16120Os.11187.1.S1_at11/118+9818284..9822128NB-ARC domain containing protein, expressed
LOC_Os08g16130Os.52672.1.S1_at11/118+9824663..9827704fiber protein Fb34, putative, expressed
LOC_Os08g16140OsAffx.22421.2.S1_at3/118+9834608..9838637transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16140OsAffx.22421.4.S1_x_at2/118+9834608..9838637transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16140OsAffx.22421.1.S1_at2/118+9834608..9838637transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16140OsAffx.16244.1.S1_x_at1/118+9834608..9838637transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16140Os.26886.3.S1_x_at1/118+9834608..9838637transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16150NANA8+9839362..9839744hypothetical protein
LOC_Os08g16160Os.27435.1.S1_x_at4/118+9841441..9844416transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16160Os.46334.1.S1_at1/118+9841441..9844416transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16160Os.46334.1.S1_x_at1/118+9841441..9844416transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16170Os.46314.3.S1_at3/118+9847008..9849167transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16170OsAffx.7362.1.S1_x_at1/118+9847008..9849167transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52672.1.S1_at--865--671Chr08:9825175..9825199 (25 bp)
ATGACTTGGTCACATGTGCCACGCT
LOC_Os08g16130
Os.52672.1.S1_at--1084--3211Chr08:9825147..9825171 (25 bp)
CAAGGGAGTCTTTGCAGCAGCTGCT
LOC_Os08g16130
Os.52672.1.S1_at--500--5071Chr08:9825131..9825155 (25 bp)
GCAGCTGCTGCCTTGATGCTTATAA
LOC_Os08g16130
Os.52672.1.S1_at--816--3911Chr08:9825101..9825125 (25 bp)
CTGGCATCTCTCATGTACTACTGGA
LOC_Os08g16130
Os.52672.1.S1_at--362--5891Chr08:9825067..9825091 (25 bp)
GAGCTGCAACAGGTGGGTTCATCAA
LOC_Os08g16130
Os.52672.1.S1_at--611--5931Chr08:9825021..9825045 (25 bp)
GAGCATGACGGATTACGGCCTTGAC
LOC_Os08g16130
Os.52672.1.S1_at--1083--4811Chr08:9824989..9825013 (25 bp)
GCTCTATGCCCTGAGTACTGGAGTA
LOC_Os08g16130
Os.52672.1.S1_at--521--9551Chr08:9824952..9824976 (25 bp)
TCTTTGTTCATCTGGCGGCTATGAC
LOC_Os08g16130
Os.52672.1.S1_at--156--1271Chr08:9824919..9824943 (25 bp)
AGATTTCTCAGCTTTCTGTGCCAGA
LOC_Os08g16130
Os.52672.1.S1_at--606--5311Chr08:9824896..9824920 (25 bp)
GAAGGTATGTTCTTGCTGTGCACAG
LOC_Os08g16130
Os.52672.1.S1_at--794--7591Chr08:9824735..9824759 (25 bp)
GGGCATTGGCTATCAGCACTACTTT
LOC_Os08g16130
Target Sequence 
ATGACTTGGTCACATGTGCCACGCTTCGCAAGGGAGTCTTTGCAGCAGCTGCTGCCTTGATGCTTATAAATCTCCTGGCA
TCTCTCATGTACTACTGGAGTTACTCGAGAGCTGCAACAGGTGGGTTCATCAAGCACCAGAACGAAGTTGGCATGAGCAT
GACGGATTACGGCCTTGACAAGGGTGGCTCTATGCCCTGAGTACTGGAGTAGCATCATGTTGCTCTTTGTTCATCTGGCG
GCTATGACGAGTTACGAGATTTCTCAGCTTTCTGTGCCAGAAGGTATGTTCTTGCTGTGCACAGTGATGCAGTGGATGAC
ACACAAATGCGGTTATGATATATAGTGGTAGTTTTATTGTATGTCTCTAAATTATTACAACGTTAAAACTCTTTAGGTCC
TGGTTGTTAATTGTTATATGGCATGTGCCTGCTTGCCATTGGGCATTGGCTATCAGCACTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis