Browse Element(s) Details


Os.52682.1.S1_at

Description gb:AK068748.1
DB_XREF= gi:32978771
TID=Os.52682.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159M15, full insert sequence.
FL= gb:AK068748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2244011/11SAM dependent carboxyl methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22400OsAffx.4901.1.S1_at10/116+13018642..13020761hypothetical protein
LOC_Os06g22410NANA6+13028815..13029183hypothetical protein
LOC_Os06g22420OsAffx.27768.1.S1_s_at11/116+13030175..13031067expressed protein
LOC_Os06g22430Os.46306.1.S1_x_at6/116+13033642..13039977transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g22440Os.52682.1.S1_at11/116+13040901..13043159SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g22450OsAffx.15555.1.S1_at11/116+13051783..13052172hypothetical protein
LOC_Os06g22460OsAffx.27769.1.S1_at11/116+13054163..13057028NB-ARC domain containing protein, expressed
LOC_Os06g22470OsAffx.27770.1.S1_x_at8/116+13060316..13061207hypothetical protein
LOC_Os06g22470Os.51841.1.S1_x_at1/116+13060316..13061207hypothetical protein
LOC_Os06g22480OsAffx.29300.1.S1_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22480OsAffx.28682.2.S1_x_at1/116+13063019..13066085retrotransposon protein, putative, unclassified
LOC_Os06g22480OsAffx.28682.2.S1_at1/116+13063019..13066085retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52682.1.S1_at--598--1951Chr06:13042451..13042475 (25 bp)
ACTGGTCCCAGGAGGCCGAATGGTA
LOC_Os06g22440
Os.52682.1.S1_at--573--4111Chr06:13042467..13042491 (25 bp)
CGAATGGTACTCTCACTTGCAGGCA
LOC_Os06g22440
Os.52682.1.S1_at--803--10731Chr06:13042483..13042507 (25 bp)
TTGCAGGCAGGCGATCTGTTGATCT
LOC_Os06g22440
Os.52682.1.S1_at--1086--8191Chr06:13042532..13042556 (25 bp)
GGAATCCACAGCCATGACCCTAAGT
LOC_Os06g22440
Os.52682.1.S1_at--678--2511Chr06:13042706..13042730 (25 bp)
AACATTCTACATGCCGATTTACGGA
LOC_Os06g22440
Os.52682.1.S1_at--411--5311Chr06:13042767..13042791 (25 bp)
GAAGGGTCCTTCTTGATACGGGAGA
LOC_Os06g22440
Os.52682.1.S1_at--74--9031Chr06:13042792..13042816 (25 bp)
TGCAGGTACCTGAACTCACGAGTGG
LOC_Os06g22440
Os.52682.1.S1_at--104--8911Chr06:13042861..13042885 (25 bp)
TGAGAGCCGCATTCGAGCCCATAAT
LOC_Os06g22440
Os.52682.1.S1_at--997--10771Chr06:13042885..13042909 (25 bp)
TTGTTCAGCATTTTGGACCGACCGG
LOC_Os06g22440
Os.52682.1.S1_at--1145--5411Chr06:13043039..13043063 (25 bp)
GAAGCCGTCATGACCATCCGGTAGA
LOC_Os06g22440
Os.52682.1.S1_at--511--1971Chr06:13043083..13043107 (25 bp)
ACTGCTACCTTCTGTCGACAGTAAA
LOC_Os06g22440
Target Sequence 
ACTGGTCCCAGGAGGCCGAATGGTACTCTCACTTGCAGGCAGGCGATCTGTTGATCTCGCCTCCGAACTCACGCACGCAT
GGGAATCCACAGCCATGACCCTAAGTGACATGGTCACTATGGGTGTGATTGACAAAGAAAAGTTTGAAACATTCTACATG
CCGATTTACGGACCTTCCGATGAAGAGATCAGACAGATCATCCAAGAAGAAGGGTCCTTCTTGATACGGGAGATGCAGGT
ACCTGAACTCACGAGTGGTGCGTACAGCGCGCTGATCACCTCGGCAAGGGTAGCAAGTATGCTGAGAGCCGCATTCGAGC
CCATAATTGTTCAGCATTTTGGACCGACCGGATGCGATGGAAAAGAAGGGATCATGGATGAGTTCGTGAGGACGGCGGAG
CGTCGGTGGAGCTTGGAGGNCAGCTTGCAAGACGAGCTTGCACAAAACCCTCGAGGCNTNCNGCTTGTGTCCCTCGAGAA
GAAGCCGTCATGACCATCCGGTAGATTATAATTATAATTATGTAACTGCTACCTTCTGTCGACAGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis