Browse Element(s) Details


Os.52700.1.S1_at

Description gb:AK068810.1
DB_XREF= gi:32978835
TID=Os.52700.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159I18, full insert sequence.
FL= gb:AK068810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2578411/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25710OsAffx.6399.1.S1_at11/119+15425337..15425864expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_s_at11/119+15429675..15430148expressed protein
LOC_Os09g25720OsAffx.17895.1.S1_at11/119+15429675..15430148expressed protein
LOC_Os09g25730NANA9+15430738..15432537transposon protein, putative, unclassified
LOC_Os09g25740OsAffx.30020.1.A1_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_x_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_at11/119+15437140..15439298expressed protein
LOC_Os09g25760Os.6961.1.S1_a_at11/119+15443235..15445530senescence-associated protein DH, putative, expressed
LOC_Os09g25770Os.49485.1.S1_at10/119+15446684..15448981Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.54575.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.52700.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25800OsAffx.30021.1.S1_at11/119+15456698..15458212nodulin MtN21 family protein, putative
LOC_Os09g25810Os.12092.1.S1_at10/119+15463769..15467832Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25820OsAffx.17897.1.S1_at9/119+15469871..15470315hypothetical protein
LOC_Os09g25830OsAffx.30022.1.S1_at11/119+15479865..15480667hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52700.1.S1_at--914--9951Chr09:15450569..15450593 (25 bp)
TACGCCTTCGCCGTGAGTTCAGAAT
LOC_Os09g25784
Os.52700.1.S1_at--398--7391Chr09:15450557..15450581 (25 bp)
GTGAGTTCAGAATTGCCATGCGTTT
LOC_Os09g25784
Os.52700.1.S1_at--487--5211Chr09:15450548..15450572 (25 bp)
GAATTGCCATGCGTTTTGTTGTGTG
LOC_Os09g25784
Os.52700.1.S1_at--243--10271Chr09:15450534..15450558 (25 bp)
TTTGTTGTGTGTGTGCCCGGACAGC
LOC_Os09g25784
Os.52700.1.S1_at--50--4551Chr09:15450520..15450544 (25 bp)
GCCCGGACAGCAGAATGGACAAGTT
LOC_Os09g25784
Os.52700.1.S1_at--313--3411Chr09:15450510..15450534 (25 bp)
CAGAATGGACAAGTTCTGGTTTTCT
LOC_Os09g25784
Os.52700.1.S1_at--481--7971Chr09:15450485..15450509 (25 bp)
GGATCTGAACTGAACAGAGCTGGAC
LOC_Os09g25784
Os.52700.1.S1_at--1118--2471Chr09:15450473..15450497 (25 bp)
AACAGAGCTGGACATAAATAATGCA
LOC_Os09g25784
Os.52700.1.S1_at--623--4751Chr09:15450310..15450334 (25 bp)
GCTGCACATTGGAAGGCACGCTTCT
LOC_Os09g25784
Os.52700.1.S1_at--582--10851Chr09:15450302..15450326 (25 bp)
TTGGAAGGCACGCTTCTTCTCTTCT
LOC_Os09g25784
Os.52700.1.S1_at--166--10591Chr09:15450286..15450310 (25 bp)
TTCTCTTCTCTCGACGACAGACACG
LOC_Os09g25784
Target Sequence 
TACGCCTTCGCCGTGAGTTCAGAATTGCCATGCGTTTTGTTGTGTGTGTGCCCGGACAGCAGAATGGACAAGTTCTGGTT
TTCTGGATCTGAACTGAACAGAGCTGGACATAAATAATGCAGGGAGTGTTTGGGTCAGGCGTCTGCTTCTACCTGCAATC
ATGGTGCATCTCGGTGAGGGGGCCCCTCTACTCGGCCATGTTCACCCCTGTCTGCACCGTGGTCACCACCATCGTCGCCG
CCGCCGTTCTCCAGGAGGAGCTGCACATTGGAAGGCACGCTTCTTCTCTTCTCTCGACGACAGACACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis