Browse Element(s) Details


Os.5272.1.S1_at

Description gb:AK070168.1
DB_XREF= gi:32980192
TID=Os.5272.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.5272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042M07, full insert sequence.
FL= gb:AK104885.1 gb:AK070168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0310011/11NADP-dependent D-sorbitol-6-phosphate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03060Os.51694.1.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.2.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.1.S1_x_at10/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03070Os.10080.1.S1_at10/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03070OsAffx.30891.1.S1_at1/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03080Os.48733.1.A1_at9/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03080Os.48081.1.S1_at1/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03090OsAffx.24079.1.S1_at11/112+1223725..1226826expressed protein
LOC_Os02g03100Os.5272.1.S1_at11/112+1227321..1230217NADP-dependent D-sorbitol-6-phosphate dehydrogenase, putative, expressed
LOC_Os02g03110Os.18465.1.S1_at11/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03110Os.18465.2.S1_x_at9/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03120Os.54770.1.S1_at10/112+1237099..1240160Endoglucanase 1 precursor, putative, expressed
LOC_Os02g03130NANA2+1245577..1247286hypothetical protein
LOC_Os02g03140NANA2+1249053..1249268inhibitor I family protein
LOC_Os02g03150NANA2+1250017..1250226inhibitor I family protein
LOC_Os02g03160OsAffx.19542.3.S1_x_at10/112+1252853..1257075retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5272.1.S1_at--809--7711Chr02:1227960..1227984 (25 bp)
GGTGGCTCCACTGCCAATACTGAGT
LOC_Os02g03100
Os.5272.1.S1_at--893--3091Chr02:1227945..1227969 (25 bp)
AATACTGAGTGGTTTGGGTCCGTCT
LOC_Os02g03100
Os.5272.1.S1_at--832--2251Chr02:1227767..1227791 (25 bp)
AAATATGGCAAGACACCGGCGCAGC
LOC_Os02g03100
Os.5272.1.S1_at--157--2471Chr02:1227716..1227740 (25 bp)
AACACAGTGGTGATCCCCAAGACAT
LOC_Os02g03100
Os.5272.1.S1_at--717--5011Chr02:1227675..1227699 (25 bp)
GCAGGAGAACTTTGCGGTCTTCGAT
LOC_Os02g03100
Os.5272.1.S1_at--867--10271Chr02:1227665..1227689 (25 bp)
TTTGCGGTCTTCGATTTCGCCATCT
LOC_Os02g03100
Os.5272.1.S1_at--550--8071Chr02:1227495..1227519 (25 bp)
GGAGCTTCTTGTGCAATCATTTTTC
LOC_Os02g03100
Os.5272.1.S1_at--378--8691Chr02:1227486..1227510 (25 bp)
TGTGCAATCATTTTTCTCTGAACTG
LOC_Os02g03100
Os.5272.1.S1_at--385--3771Chr02:1227471..1227495 (25 bp)
CTCTGAACTGAAACTTCTTGTGCTG
LOC_Os02g03100
Os.5272.1.S1_at--842--231Chr02:1227367..1227391 (25 bp)
ATATTTCGTGTATTTGCGCTTCTGC
LOC_Os02g03100
Os.5272.1.S1_at--583--9031Chr02:1227345..1227369 (25 bp)
TGCAGCCCGCCTAATCAATAAATTT
LOC_Os02g03100
Target Sequence 
GGTGGCTCCACTGCCAATACTGAGTGGTTTGGGTCCGTCTCATGCCTCGACGACCCTGTCATCAAGNNNNNNNNNNNNNN
NNNNNNNTCTCTGGCTGAGAAATATGGCAAGACACCGGCGCAGCTGGTGCTCCGGTGGGGGCTTCAGAGGAACACAGTGG
TGATCCCCAAGACATCCAAGGAGGAGAGATTGCAGGAGAACTTTGCGGTCTTCGATTTCGCCATCTCCGACGAGGACATG
GAGAAGATGAGATCCATCGACCGGAAGTACCGCACCAACCAGCCTGCCAAGTTCTGGGGAATCGACCTGTTTGCTTGATG
AATTATGAGTCTTTAGCACGAACAATAATGGGGGCTTTTCTACTGTCCCTGGGAGCTTCTTGTGCAATCATTTTTCTCTG
AACTGAAACTTCTTGTGCTGAAGGATGAAGTTGTTGGGATCGTGTGAACTTGAATTGTTATTCAAAGGGAAAAAAAAAGT
GTGAACTTGAATTGTATCTATATTTCGTGTATTTGCGCTTCTGCAGCCCGCCTAATCAATAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis