Browse Element(s) Details


Os.52726.1.S1_at

Description gb:AK068944.1
DB_XREF= gi:32978968
TID=Os.52726.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170G22, full insert sequence.
FL= gb:AK068944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1367011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13640Os.18105.1.S1_at11/1112+7662344..7666944HGA6, putative, expressed
LOC_Os12g13650OsAffx.19654.1.S1_at10/1112+7672802..7674141hypothetical protein
LOC_Os12g13660Os.54031.1.S1_at11/1112+7676115..7683511expressed protein
LOC_Os12g13670Os.52726.1.S1_at11/1112+7686375..7696616expressed protein
LOC_Os12g13680OsAffx.31730.1.S1_x_at11/1112+7715938..7716552hypothetical protein
LOC_Os12g13680OsAffx.28472.1.S1_x_at10/1112+7715938..7716552hypothetical protein
LOC_Os12g13690NANA12+7717151..7717474hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52726.1.S1_at--493--6251Chr12:7686919..7686943 (25 bp)
GATGGTTTACTTAAGCTGACTCACA
LOC_Os12g13670
Os.52726.1.S1_at--66--7311Chr12:7686790..7686814 (25 bp)
GTGCGTTCCTCTTCTGGAATTACAA
LOC_Os12g13670
Os.52726.1.S1_at--721--6771Chr12:7686703..7686727 (25 bp)
GTTACTCAAGCATCTGGTACGGCAA
LOC_Os12g13670
Os.52726.1.S1_at--1085--131Chr12:7686646..7686670 (25 bp)
ATTATGGTAGTTCCATTCCACGCGC
LOC_Os12g13670
Os.52726.1.S1_at--517--4591Chr12:7686625..7686649 (25 bp)
GCGCAATCAAGTCGTCCACAGTTGG
LOC_Os12g13670
Os.52726.1.S1_at--190--5631Chr12:7686595..7686619 (25 bp)
GACACAGGGCCTTAAGTTAGATTTT
LOC_Os12g13670
Os.52726.1.S1_at--271--7391Chr12:7686559..7686583 (25 bp)
GTGATGGTGCATTCCGTTTTTTAGG
LOC_Os12g13670
Os.52726.1.S1_at--503--5091Chr12:7686524..7686548 (25 bp)
GCACCCCAGAGCTATTCTTTTGTAA
LOC_Os12g13670
Os.52726.1.S1_at--601--3651Chr12:7686464..7686488 (25 bp)
CTTCTGCTTGTTATGTGGTCTATCA
LOC_Os12g13670
Os.52726.1.S1_at--433--7811Chr12:7686448..7686472 (25 bp)
GGTCTATCAGGGTTGTCCAAAGTGT
LOC_Os12g13670
Os.52726.1.S1_at--364--311Chr12:7686395..7686419 (25 bp)
ATAGCCTGTTTTGTTGCAATGCATG
LOC_Os12g13670
Target Sequence 
GATGGTTTACTTAAGCTGACTCACAGACGAACGCCTAACCGTAAGGTTAAAAGGAAAAGATTGGAAGGTGAAACAACCAT
AACCGAAAATGCTGAAAAGAAAGATGATATCTCTACAGACCACTCACCCGTGCGTTCCTCTTCTGGAATTACAAGGACAT
CTGAGAGCATGAAGCCTCCAAAACTGGAATCCAAGTGCAACTGTATAATTATGTAAGTTACTCAAGCATCTGGTACGGCA
AAGGTGACTTGAAATAGAGGTTGGAATTGATGTATTATGGTAGTTCCATTCCACGCGCAATCAAGTCGTCCACAGTTGGT
GAGTGACACAGGGCCTTAAGTTAGATTTTTTTTTTTTTTTTGTGATGGTGCATTCCGTTTTTTAGGTAACAGAAGTGCAC
CCCAGAGCTATTCTTTTGTAAATTCTTTTTTCCCCTATGTTCCTGTTTTGTCAGATCTTCTGCTTGTTATGTGGTCTATC
AGGGTTGTCCAAAGTGTGAATTTACTAGATTAAATATCTGTATTTATAGCCTGTTTTGTTGCAATGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis