Browse Element(s) Details


Os.52769.1.S1_at

Description gb:AK069155.1
DB_XREF= gi:32979179
TID=Os.52769.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004L23, full insert sequence.
FL= gb:AK069155.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g661406/11Plus-3 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66110Os.5194.2.S1_at11/111+38713118..38718607dehydration-responsive protein, putative, expressed
LOC_Os01g66110Os.5194.1.S1_x_at11/111+38713118..38718607dehydration-responsive protein, putative, expressed
LOC_Os01g66120Os.12199.1.S1_at10/111+38725728..38728330NAC-domain containing protein 2, putative, expressed
LOC_Os01g66130Os.17102.1.S1_at10/111+38736091..38739906arm repeat-containing protein, putative, expressed
LOC_Os01g66140Os.52769.1.S1_at6/111+38740330..38751209Plus-3 domain containing protein, expressed
LOC_Os01g66150OsAffx.11753.1.S1_at10/111+38758155..38760519expressed protein
LOC_Os01g66150OsAffx.13530.1.S1_at1/111+38758155..38760519expressed protein
LOC_Os01g66160OsAffx.23934.1.S1_at11/111+38762370..38763923selenium-binding protein, putative, expressed
LOC_Os01g66170Os.27670.1.S1_at10/111+38763995..38767261expressed protein
LOC_Os01g66180Os.11485.1.S1_at9/111+38770476..38773268Cytochrome c, putative, expressed
LOC_Os01g66190Os.16257.1.S1_at11/111+38774986..38777347expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52769.1.S1_at--951--9311Chr01:38740603..38740627 (25 bp)
TCCCACTCTTCCTTGTGCTAAGAGA
LOC_Os01g66140
Os.52769.1.S1_at--882--9831Chr01:38740552..38740579 (25 bp)
TAAAGGCCGTGTTCCTATCGCTGCA
LOC_Os01g66140
Os.52769.1.S1_at--461--3191Chr01:38740515..38740539 (25 bp)
CAATCCATGAATGCGCCAGGTGAGC
LOC_Os01g66140
Os.52769.1.S1_at--137--5451Chr01:38740420..38740444 (25 bp)
GAACTGGCACCGGAATCGTTTCTTC
LOC_Os01g66140
Os.52769.1.S1_at--986--5271Chr01:38740357..38740381 (25 bp)
GAATGATTCCGTCCTGCTAACAGAG
LOC_Os01g66140
Os.52769.1.S1_at--719--8431Chr01:38740333..38740357 (25 bp)
GGCCATGGGCCTGAAATTTTCTTCT
LOC_Os01g66140
Os.52769.1.S1_at--426--10631Chr01:38740285..38740309 (25 bp)
TTCGTTCCTTGCGTTATTCAACAGT
NONE
Os.52769.1.S1_at--921--7431Chr01:38740262..38740286 (25 bp)
GTGTAGCTGAACCTTAAGCAGGCAT
NONE
Os.52769.1.S1_at--899--1511Chr01:38740246..38740270 (25 bp)
AGCAGGCATCGCTGAAGCTTGAGTT
NONE
Os.52769.1.S1_at--191--8571Chr01:38740209..38740233 (25 bp)
TAGTTTTGGTCATAGGCGGTTCAGT
NONE
Os.52769.1.S1_at--1088--71Chr01:38740075..38740099 (25 bp)
ATTCCAATGTCAGACGCTCAGAGCC
NONE
Target Sequence 
TCCCACTCTTCCTTGTGCTAAGAGAGGCAAGAACGGGACTACCGCGCCTAAAGGCCGTGTTCCTATCGCTGCACTTCACG
CACTGCAATCCATGAATGCGCCAGGTGAGCATGAATACATATGGAATTACGCGGATCCTCAGGGGAAAGTGCAAGGGCCA
TTCACAATGGAGCATATGCGGAACTGGCACCGGAATCGTTTCTTCCCTCCGGACTTCAGGGTGTGGAGATTAGGCCAGAC
ACAGAATGATTCCGTCCTGCTAACAGAGGCCATGGGCCTGAAATTTTCTTCTTGACCTAAATAGGCTTTTTTTTTTTCGT
TCCTTGCGTTATTCAACAGTGTAGCTGAACCTTAAGCAGGCATCGCTGAAGCTTGAGTTGATGTAAATGTTTAGTTTTGG
TCATAGGCGGTTCAGTGGAGATCTTTTTTTTTTCTTTAGTGATGTTTTAGCAGATTGCAATGTCTAGCAAAATTTGCTAA
ACAAGGCAAACAGAAATGGACAGTCGGTTTAGTGATGTTTAGCATATTCCAATGTCAGACGCTCAGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis