Browse Element(s) Details


Os.52780.1.S1_at

Description gb:AK069215.1
DB_XREF= gi:32979239
TID=Os.52780.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010M03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010M03, full insert sequence.
FL= gb:AK069215.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0771010/11SVP1-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07670Os.52206.1.S1_at11/115+4095830..4099281integral membrane protein, putative, expressed
LOC_Os05g07680Os.6821.1.S1_at11/115+4107214..4112242CENP-E like kinetochore protein, putative, expressed
LOC_Os05g07690Os.35448.1.S1_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.2.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.1.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07700Os.11021.1.S1_s_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700OsAffx.14582.1.S1_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700Os.11021.2.S1_x_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07710Os.52780.1.S1_at10/115+4123002..4126984SVP1-like protein 2, putative, expressed
LOC_Os05g07720Os.13941.1.S1_x_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07720Os.13941.1.S1_s_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07730Os.53590.1.S1_at1/115+4139455..4142800hypothetical protein
LOC_Os05g07740OsAffx.14583.1.S1_at11/115+4150945..4154446leucine-rich repeat protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
GO:0010149biological_processsenescence (sensu Magnoliophyta)
GO:0042594biological_processresponse to starvation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52780.1.S1_at--1137--1571Chr05:4124865..4124889 (25 bp)
AGCTCATCCCTGTCTTTCATGAAAG
LOC_Os05g07710
Os.52780.1.S1_at--586--1471Chr05:4125536..4125560 (25 bp)
AGAATGGTCTTTTGCTCAGTTCCGT
LOC_Os05g07710
Os.52780.1.S1_at--1091--491NONE
ATCGGTCTTGATGGCAGTTTCTACA
NONE
Os.52780.1.S1_at--925--6831Chr05:4126549..4126573 (25 bp)
GTTTCTACAGATACAGCTTTGACCC
LOC_Os05g07710
Os.52780.1.S1_at--489--5231Chr05:4126602..4126626 (25 bp)
GAATATCACCTGTTTCTGAAGGCCA
LOC_Os05g07710
Os.52780.1.S1_at--1082--1751Chr05:4126653..4126677 (25 bp)
ACCTGAGCTTCATGGTGGGTCATAC
LOC_Os05g07710
Os.52780.1.S1_at--709--8631Chr05:4126668..4126692 (25 bp)
TGGGTCATACCATCATCTCAGTTTA
LOC_Os05g07710
Os.52780.1.S1_at--756--1211Chr05:4126712..4126736 (25 bp)
AGTTCAATGCGTACTGTTCTCTCTA
LOC_Os05g07710
Os.52780.1.S1_at--1019--3391Chr05:4126764..4126788 (25 bp)
CAGCATAGGCTATTTCATTCCGAAT
LOC_Os05g07710
Os.52780.1.S1_at--22--10051Chr05:4126878..4126902 (25 bp)
TAGGAATGAGTCATTTCCCACCGGA
LOC_Os05g07710
Os.52780.1.S1_at--807--1771Chr05:4126897..4126921 (25 bp)
ACCGGATGTGACCTAGTTGTAACTT
LOC_Os05g07710
Target Sequence 
AGCTCATCCCTGTCTTTCATGAAAGGGATTCTGCCGAAATACTTCAGTTCAGAATGGTCTTTTGCTCAGTTCCGTTTACC
AGAAATCACGCGGTATATTATGGCATTTGGAGATCAAGACACTGTAATGATGATCGGTCTTGATGGCAGTTTCTACAGAT
ACAGCTTTGACCCTGTAAATGGCGGGGAGATGATGCTCAAGGAATATCACCTGTTTCTGAAGGCCAGCAAATCTTTGTGA
AGAACTCCAAACACCTGAGCTTCATGGTGGGTCATACCATCATCTCAGTTTATATCTAGATGGTCTGACTAAGTTCAATG
CGTACTGTTCTCTCTAGTAACATTTCTCACTAGCAAGGTTAATCAGCATAGGCTATTTCATTCCGAATTAGGCGTAATTT
TTGCACATATTAGGGGTTAGTCTTTTTTTTGTTGGCTTTTCTACATCAGTAAGCTTAACTGAAATGTATAAATTTCTTAG
GAATGAGTCATTTCCCACCGGATGTGACCTAGTTGTAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis