Browse Element(s) Details


Os.52790.1.S1_at

Description gb:AK069269.1
DB_XREF= gi:32979293
TID=Os.52790.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023018K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018K07, full insert sequence.
FL= gb:AK069269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3936011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39330OsAffx.18057.1.S1_at11/119+22609915..22619148retrotransposon protein, putative, unclassified, expressed
LOC_Os09g39334Os.53474.1.S1_at10/119+22622263..22623247expressed protein
LOC_Os09g39340OsAffx.30206.1.S1_at10/119+22624664..22627016hypothetical protein
LOC_Os09g39350Os.12214.1.S1_at11/119+22630629..22633014expressed protein
LOC_Os09g39360Os.52790.1.S1_at11/119+22634997..22637833expressed protein
LOC_Os09g39370OsAffx.30207.1.S1_at11/119+22638131..22640118hypothetical protein
LOC_Os09g39380Os.6239.1.S1_at8/119+22644422..22648010Monodehydroascorbate reductase, putative, expressed
LOC_Os09g39390Os.6765.1.S1_a_at11/119+22648606..22651602oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os09g39400Os.4702.1.S1_at11/119+22653383..22656565Histidine-containing phosphotransfer protein 1, putative, expressed
LOC_Os09g39410Os.47472.1.S1_at8/119+22660210..22664877Male sterility protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52790.1.S1_at--299--3732Chr09:22637425..22637449 (25 bp)
CTCAAAGACCGTGTCGAGATCCAAA
LOC_Os09g39360
Os.52790.1.S1_at--671--10511Chr09:22637503..22637527 (25 bp)
TTCACTGATTCACCTATTGCATATG
LOC_Os09g39360
Os.52790.1.S1_at--121--311Chr09:22637548..22637572 (25 bp)
ATAGCTGGCACATATTTTTCTTAAT
LOC_Os09g39360
Os.52790.1.S1_at--35--6791Chr09:22637587..22637611 (25 bp)
GTTTTCCTTAATTTTTGGTGCATCT
LOC_Os09g39360
Os.52790.1.S1_at--701--10391Chr09:22637599..22637623 (25 bp)
TTTTGGTGCATCTTACGTTTGTCGT
LOC_Os09g39360
Os.52790.1.S1_at--401--431Chr09:22637608..22637632 (25 bp)
ATCTTACGTTTGTCGTCGGCACATC
LOC_Os09g39360
Os.52790.1.S1_at--103--2111Chr09:22637628..22637652 (25 bp)
ACATCCCCTCTTATCATCGTAATAT
LOC_Os09g39360
Os.52790.1.S1_at--717--9331Chr09:22637666..22637690 (25 bp)
TCGCTCTGTCCATAAGTCTTGTATC
LOC_Os09g39360
Os.52790.1.S1_at--160--6071Chr09:22637703..22637727 (25 bp)
GAGTTCTTGTGGACAACACATGAAA
LOC_Os09g39360
Os.52790.1.S1_at--216--1851Chr09:22637752..22637776 (25 bp)
ACAACTATGCCTATAAAAGCCCAAG
LOC_Os09g39360
Os.52790.1.S1_at--261--6551Chr09:22637807..22637831 (25 bp)
GATTTTCTATACTCACTGTGATGAT
LOC_Os09g39360
Target Sequence 
CTCAAAGACCGTGTCGAGATCCAAAAAATGCTTATATTTTGGGATAGATGGGATGGAAGGAGTATTGTTTAATTTTCTTT
CACTGATTCACCTATTGCATATGTAATACTTCTTTTTAAGAAAATAGCTGGCACATATTTTTCTTAATTATTTTTCTTTT
TTGTTTTCCTTAATTTTTGGTGCATCTTACGTTTGTCGTCGGCACATCCCCTCTTATCATCGTAATATTTTCTCTCTTTT
CTCGCTCTGTCCATAAGTCTTGTATCAGTTTTCTTCCAGAGTTCTTGTGGACAACACATGAAAAGAGATGTCCTGTACAT
AAAAATTACAACTATGCCTATAAAAGCCCAAGCATTATGGGCAAGAATATGTAGTACATTTTGATTTTCTATACTCACTG
TGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis