Browse Element(s) Details


Os.52791.1.S1_at

Description gb:AK069270.1
DB_XREF= gi:32979294
TID=Os.52791.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013P18, full insert sequence.
FL= gb:AK069270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3996011/11Dynamin-related protein 1C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39910Os.38157.1.S1_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.38157.1.S1_s_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.15747.1.A1_at10/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39920Os.55181.1.S1_at11/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39920OsAffx.19468.2.S1_at1/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39930Os.12654.1.S1_at11/119+22902539..22904349Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os09g39940Os.21629.1.S1_at11/119+22907376..22908312Plastocyanin-like domain containing protein, expressed
LOC_Os09g39950Os.50339.1.S1_at11/119+22908515..22909225Pollen-specific protein C13 precursor, putative, expressed
LOC_Os09g39960Os.52791.1.S1_at11/119+22911086..22916239Dynamin-related protein 1C, putative, expressed
LOC_Os09g39970Os.53580.1.S1_at11/119+22916723..22925111Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os09g39980Os.18292.1.S1_at4/119+22924985..22928249ubiquitin family protein, putative, expressed
LOC_Os09g40000Os.5443.1.S1_x_at11/119+22933510..22938704expressed protein
LOC_Os09g40000Os.5443.1.S1_at11/119+22933510..22938704expressed protein
LOC_Os09g40000Os.49143.1.S1_at10/119+22933510..22938704expressed protein
LOC_Os09g40000Os.49645.1.S1_at10/119+22933510..22938704expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000266biological_processmitochondrial fission
GO:0000911biological_processcytokinesis by cell plate formation
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0010152biological_processpollen maturation
GO:0016192biological_processvesicle-mediated transport
GO:0005874cellular_componentmicrotubule
GO:0009504cellular_componentcell plate
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52791.1.S1_at--849--911Chr09:22911738..22911762 (25 bp)
AGGCTCAGTGACAGTGGACCGCTAC
LOC_Os09g39960
Os.52791.1.S1_at--117--5231Chr09:22911696..22911720 (25 bp)
GAATATCGCGTCCAATGTGTCCCAG
LOC_Os09g39960
Os.52791.1.S1_at--409--9031Chr09:22911619..22911643 (25 bp)
TGCACTGTCAGGTCCGAGAAGCCAA
LOC_Os09g39960
Os.52791.1.S1_at--1069--7151Chr09:22911591..22911615 (25 bp)
GTCTCTGCTTAACCATTTCTACGTG
LOC_Os09g39960
Os.52791.1.S1_at--176--6191Chr09:22911432..22911456 (25 bp)
GAGGACCCAGCGATGCTTGAGCGTA
LOC_Os09g39960
Os.52791.1.S1_at--894--5711Chr09:22911354..22911378 (25 bp)
GACTCTGTCGCATGGACCAGGTAGA
LOC_Os09g39960
Os.52791.1.S1_at--132--8631Chr09:22911315..22911339 (25 bp)
TGGTGGCTAGTATCTTTTGTCGCAG
LOC_Os09g39960
Os.52791.1.S1_at--1129--2511Chr09:22911262..22911286 (25 bp)
AACTTCCATTTGTCAGGCAGGCACT
LOC_Os09g39960
Os.52791.1.S1_at--755--931Chr09:22911244..22911268 (25 bp)
AGGCACTATTTTCCCTTGGTATATA
LOC_Os09g39960
Os.52791.1.S1_at--775--7111Chr09:22911166..22911190 (25 bp)
GTCAGTAGATCATCCTTCGTACATG
LOC_Os09g39960
Os.52791.1.S1_at--949--10211Chr09:22911095..22911119 (25 bp)
TATTCTTTCTAGTGGTTGGCTTCTC
LOC_Os09g39960
Target Sequence 
AGGCTCAGTGACAGTGGACCGCTACGGCGACGGGCACTACAGGAATATCGCGTCCAATGTGTCCCAGTACATAAAGATGG
TGGGAGACCAACTGTTACACAAGATCCCAAAGGCGGTGGTGCACTGTCAGGTCCGAGAAGCCAAGAGGTCTCTGCTTAAC
CATTTCTACGTGCACATCGGGAAGAAAGAGGCGAGCCAGTTTGGGCATTTACTGGATGAGGACCCAGCGATGCTTGAGCG
TAGGCAGCAATGCTGGAAGAGGTTGGAGCTGTACAAATCGGCTAGGGATGAAATCGACTCTGTCGCATGGACCAGGTAGA
CACAAACATATACATGGTGGCTAGTATCTTTTGTCGCAGCTGCGTGTAGTTTGGTTTGGGCAGATCTAACTTCCATTTGT
CAGGCAGGCACTATTTTCCCTTGGTATATAGTATATACTATACTATCTTACGAATTGATGGACGTTATATATCTGTATAT
TTTGTCAGTAGATCATCCTTCGTACATGTNNACCCCGACCCGTGCCATGCTGGTTTCAACAGTTTTTCTTTTGTTATTCT
TTCTAGTGGTTGGCTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis