Browse Element(s) Details

Os.52817.1.S1_at

Description

gb:AK069433.1
DB_XREF= gi:32979457
TID=Os.52817.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025M19, full insert sequence.
FL= gb:AK069433.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g38200	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g38140	OsAffx.31070.2.S1_x_at	11/11	6	+	22589634..22592651	hypothetical protein
LOC_Os06g38140	OsAffx.31070.2.S1_at	11/11	6	+	22589634..22592651	hypothetical protein
LOC_Os06g38140	OsAffx.31069.1.S1_x_at	1/11	6	+	22589634..22592651	hypothetical protein
LOC_Os06g38140	OsAffx.31070.1.S1_x_at	1/11	6	+	22589634..22592651	hypothetical protein
LOC_Os06g38150	OsAffx.15814.1.S1_at	11/11	6	+	22593566..22593928	hypothetical protein
LOC_Os06g38160	OsAffx.15815.1.S1_at	11/11	6	+	22597674..22600260	Legume lectins beta domain containing protein
LOC_Os06g38170	Os.7582.1.S1_at	1/11	6	+	22600739..22602679	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38170	Os.31929.5.S1_at	1/11	6	+	22600739..22602679	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38180	NA	NA	6	+	22604602..22605860	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38190	OsAffx.15816.1.S1_at	10/11	6	+	22610892..22612283	hypothetical protein
LOC_Os06g38200	Os.52817.1.S1_at	11/11	6	+	22613002..22615284	expressed protein
LOC_Os06g38210	Os.12027.1.S1_a_at	6/11	6	+	22615947..22616270	expressed protein
LOC_Os06g38220	Os.43124.1.S1_at	1/11	6	+	22618319..22620632	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38230	OsAffx.27985.1.S1_at	11/11	6	+	22622060..22624605	hypothetical protein
LOC_Os06g38240	NA	NA	6	+	22626393..22629965	retrotransposon protein, putative, unclassified
LOC_Os06g38250	NA	NA	6	+	22631137..22631904	retrotransposon protein, putative, unclassified
LOC_Os06g38260	NA	NA	6	+	22635631..22637917	retrotransposon protein, putative, unclassified
LOC_Os06g38270	NA	NA	6	+	22638451..22641111	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52817.1.S1_at--622--361	1	Chr06:22614686..22614710 (25 bp)	CTTGTTCACTGTGGGCTCGGAGGAA	LOC_Os06g38200
Os.52817.1.S1_at--356--109	1	Chr06:22614724..22614748 (25 bp)	AGTGGCGCCGGCTACAATAGTAGGC	LOC_Os06g38200
Os.52817.1.S1_at--343--967	1	Chr06:22614753..22614777 (25 bp)	TCACGGCGGCTATAGTGTTGGGTCC	LOC_Os06g38200
Os.52817.1.S1_at--145--837	1	Chr06:22614901..22614925 (25 bp)	GGCGATGTTTCGATTGGATTACCAT	LOC_Os06g38200
Os.52817.1.S1_at--682--87	1	Chr06:22614928..22614952 (25 bp)	AGGCCTATGCTCTACACAAAAGTGT	LOC_Os06g38200
Os.52817.1.S1_at--611--241	1	Chr06:22614945..22614969 (25 bp)	AAAAGTGTAGGACGGCCATGTTCCA	LOC_Os06g38200
Os.52817.1.S1_at--623--517	1	Chr06:22614999..22615023 (25 bp)	GCAAGAAGTCATGAGCTCGCTGCTT	LOC_Os06g38200
Os.52817.1.S1_at--294--591	1	Chr06:22615011..22615035 (25 bp)	GAGCTCGCTGCTTTGTCAAATTGTC	LOC_Os06g38200
Os.52817.1.S1_at--274--251	1	Chr06:22615070..22615094 (25 bp)	AACTTCGTCCCTGTCCATCAGGAAA	LOC_Os06g38200
Os.52817.1.S1_at--595--379	1	Chr06:22615114..22615138 (25 bp)	CTCCGTTCGGCTGCACTTAATTTAA	LOC_Os06g38200
Os.52817.1.S1_at--868--213	1	Chr06:22615159..22615183 (25 bp)	ACAGTATGTTATGTCTGCAGCTGCA	LOC_Os06g38200

Target Sequence

CTTGTTCACTGTGGGCTCGGAGGAAGTGCGACGGAGGCAGTGGCGCCGGCTACAATAGTAGGCAAAGTCACGGCGGCTAT
AGTGTTGGGTCCGAGAATAGGCGGAGCCGGTGGCGTGCCACGAGAGGTGGATGTGGCGTCCTAAATGCGCGGGGAGGTGG
ACGCGGCGTGATTGGGTGCAGGGGGCAAGGCGGACATGATGACATGGGAGAAGGCGGCGATGTTTCGATTGGATTACCAT
AGAGGCCTATGCTCTACACAAAAGTGTAGGACGGCCATGTTCCAGCCGTCAGTACCGTCTGGTGGCTTCGGCGGCAAGAA
GTCATGAGCTCGCTGCTTTGTCAAATTGTCATCCTTCTCTTCGGCGCCGCTTCGATCACGCTGCAACTTCGTCCCTGTCC
ATCAGGAAAGAACTGAAGCCGAAATTGGCTCCGTTCGGCTGCACTTAATTTAACTGTTGTACAGCCAACCCAAACAGTAT
GTTATGTCTGCAGCTGCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis