Browse Element(s) Details


Os.52843.1.S1_at

Description gb:AK069557.1
DB_XREF= gi:32979581
TID=Os.52843.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020H16, full insert sequence.
FL= gb:AK069557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g042108/11calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os08g433001/11UBX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04200NANA7+1832133..1834007UDP-3-O- glucosamine N-acyltransferase, putative, expressed
LOC_Os07g04210Os.52843.1.S1_at8/117+1840296..1846876calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g04210OsAffx.28272.1.S1_at1/117+1840296..1846876calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g04220OsAffx.28258.1.S1_at11/117+1849857..1854420wound and phytochrome signaling involved receptor like kinase, putative, expressed
LOC_Os07g04230OsAffx.16077.1.S1_at10/117+1854979..1859026mitochondrial transcription termination factor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_s_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.22581.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.57488.1.S1_x_at4/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52843.1.S1_at--211--391Chr07:1846129..1846153 (25 bp)
ATCACTGGTGTTTGGGAGCTACTTA
LOC_Os07g04210
Os.52843.1.S1_at--970--111Chr07:1846178..1846202 (25 bp)
ATTCATTTCGATGAGGCCTTCTCCT
LOC_Os07g04210
Os.52843.1.S1_at--968--2211Chr07:1846221..1846245 (25 bp)
ACAAGGCATTTACACGGTTCCATAT
LOC_Os07g04210
Os.52843.1.S1_at--897--5831Chr07:1846259..1846283 (25 bp)
GACCTTGAAGTTTTCACCTTTGCTG
LOC_Os07g04210
Os.52843.1.S1_at--382--4311Chr07:1846275..1846686 (25 bp)
CCTTTGCTGTCGACAAGGTGCCAAA
LOC_Os07g04210
Os.52843.1.S1_at--1149--8072Chr07:1846717..1846741 (25 bp)
GGAGCCAAAGGAGCCATTCCAGATG
LOC_Os07g04210
Os.52843.1.S1_at--198--6311Chr07:1846738..1846762 (25 bp)
GATGAGCTACACCAGGAAGTTCCCC
LOC_Os07g04210
Os.52843.1.S1_at--608--2651Chr07:1846795..1846819 (25 bp)
AACCAATGCGGTGCGGATCGTCGAC
LOC_Os07g04210
Os.52843.1.S1_at--243--1252Chr07:1846871..1846895 (25 bp)
AGTTGATCAATTGTAGCCTAGCTTA
NONE
Os.52843.1.S1_at--547--431Chr07:1846930..1846954 (25 bp)
ATCTTGTTCTATCTCCCTGTATAAA
NONE
Os.52843.1.S1_at--161--5431Chr07:1846971..1846995 (25 bp)
GAAGCCTTCTGACATACTCTAGCAT
NONE
Target Sequence 
ATCACTGGTGTTTGGGAGCTACTTATACATATGCATAAACTGGTTTCATATTCATTTCGATGAGGCCTTCTCCTCACTGC
GCATAGCCAATTACAAGGCATTTACACGGTTCCATATCAAGAAGAATGGAGACCTTGAAGTTTTCACCTTTGCTGTCGAC
AAGGTGCCAAAAGACTGGATGCTGGATCCAGACTGGGACATGGAGCCAAAGGAGCCATTCCAGATGAGCTACACCAGGAA
GTTCCCCAGCAAATGGAGGGCCGCCTCCGGCTCGGACCCAACCAATGCGGTGCGGATCGTCGACCATTTCGTCATCCCTC
GGACACCCCCAGATTCCCCAACCTCAGGATCTGCTAGTTGATCAATTGTAGCCTAGCTTAAGATCATAGTGTTGTAATGT
ACAGTGTAGTAGCTATCTTGTTCTATCTCCCTGTATAAATTGTACAGCAACACAAGAAGCCTTCTGACATACTCTAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis