Browse Element(s) Details


Os.52854.1.S1_at

Description gb:AK069604.1
DB_XREF= gi:32979628
TID=Os.52854.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.52854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025D08, full insert sequence.
FL= gb:AK069604.1 gb:AK105890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2848011/11glutathione S-transferase GSTU1, putative, expressed
LOC_Os03g588501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28460Os.22737.1.S1_at9/117+16648800..16655547transposon protein, putative, unclassified, expressed
LOC_Os07g28460OsAffx.28645.1.S1_at9/117+16648800..16655547transposon protein, putative, unclassified, expressed
LOC_Os07g28470OsAffx.23036.1.S1_at11/117+16658593..16668290expressed protein
LOC_Os07g28470OsAffx.32203.1.S1_x_at1/117+16658593..16668290expressed protein
LOC_Os07g28480Os.52854.1.S1_at11/117+16672533..16673633glutathione S-transferase GSTU1, putative, expressed
LOC_Os07g28490NANA7+16677773..16679974retrotransposon protein, putative, unclassified
LOC_Os07g28500OsAffx.20823.2.S1_at4/117+16681055..16681926retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28500OsAffx.20823.2.S1_x_at4/117+16681055..16681926retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28510Os.27691.2.S1_x_at2/117+16683217..16689054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28510Os.27691.1.S1_x_at1/117+16683217..16689054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28530NANA7+16692797..16696269retrotransposon protein, putative, unclassified
LOC_Os07g28540Os.28943.1.S1_x_at4/117+16696890..16700285retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009407biological_processtoxin catabolism
GO:0042631biological_processcellular response to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52854.1.S1_at--859--10612Chr07:16673173..16673197 (25 bp)
TTCGGCGGCGAGTTTGGGTTTGTGG
LOC_Os07g28480
Os.52854.1.S1_at--889--4971Chr07:16673387..16673411 (25 bp)
GCATCGACGACTAGCTACGCTATTG
LOC_Os07g28480
Os.52854.1.S1_at--291--2031Chr07:16673396..16673420 (25 bp)
ACTAGCTACGCTATTGTGTGTACAC
LOC_Os07g28480
Os.52854.1.S1_at--808--4851Chr07:16673400..16673424 (25 bp)
GCTACGCTATTGTGTGTACACCTTA
LOC_Os07g28480
Os.52854.1.S1_at--124--8751Chr07:16673414..16673438 (25 bp)
TGTACACCTTAATTTGGTTGTTATT
LOC_Os07g28480
Os.52854.1.S1_at--722--10211Chr07:16673438..16673462 (25 bp)
TATTACTGCTATTTACTCATTTAAC
LOC_Os07g28480
Os.52854.1.S1_at--31--3732Chr07:16673453..16673477 (25 bp)
CTCATTTAACTACTTGTCGTAATTA
LOC_Os07g28480
Os.52854.1.S1_at--261--4491Chr07:16673511..16673535 (25 bp)
GCCGGCTGGCAGGTTCAAGTAATTT
LOC_Os07g28480
Os.52854.1.S1_at--608--4711Chr07:16673515..16673539 (25 bp)
GCTGGCAGGTTCAAGTAATTTGTAT
LOC_Os07g28480
Os.52854.1.S1_at--850--3231Chr07:16673550..16673574 (25 bp)
CAAGCGTAAACTGTACTCTCCGATC
LOC_Os07g28480
Os.52854.1.S1_at--703--3771Chr07:16673565..16673589 (25 bp)
CTCTCCGATCATTACTTTACACTTT
LOC_Os07g28480
Target Sequence 
TTCGGCGGCGAGTTTGGGTTTGTGGACGTGGCGCTGGTGCCGATGATGCCGTGGGTGTACAGCTTCGCGAGGTACGGCGG
GTTCAGCGTGGAGGAGGAGTGCCCGCGGGTGGCGGCGTGGGCGCGGCGGTGCATGGAGCGGGACAGCGTCGCCGGCAGCC
TCCGCTCGCCGGAGGAGATCTACGACTTCATCGGCCTCCTCAGGAAGCACTACGGCATCGACGACTAGCTACGCTATTGT
GTGTACACCTTAATTTGGTTGTTATTATTACTGCTATTTACTCATTTAACTACTTGTCGTAATTAATCAAGGTCGTTCAA
AATAACTTGTTTAATTTCGCCGGCTGGCAGGTTCAAGTAATTTGTATTTGAAGTTTACAAGCGTAAACTGTACTCTCCGA
TCATTACTTTACACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis