Browse Element(s) Details


Os.52881.1.S1_at

Description gb:AK069703.1
DB_XREF= gi:32979727
TID=Os.52881.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027C22, full insert sequence.
FL= gb:AK069703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6241011/11Phospholipase D gamma 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62350Os.35344.18.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350Os.35344.3.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350OsAffx.22940.5.S1_x_at3/113+35265693..35267285hypothetical protein
LOC_Os03g62360NANA3+35268944..35269576hypothetical protein
LOC_Os03g62370Os.49694.1.S1_at11/113+35271028..35273340WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g62379OsAffx.25795.1.S1_at10/113+35274340..35276037Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g62388OsAffx.3674.1.S1_at11/113+35276862..35279517hypothetical protein
LOC_Os03g62400OsAffx.25796.1.S1_at10/113+35284103..35287960pentatricopeptide, putative
LOC_Os03g62410Os.52881.1.S1_at11/113+35289129..35293830Phospholipase D gamma 3, putative, expressed
LOC_Os03g62420OsAffx.13583.1.S1_at11/113+35295028..35297793expressed protein
LOC_Os03g62430Os.49388.1.S1_at9/113+35299723..35304099Calcium binding EGF domain containing protein, expressed
LOC_Os03g62440NANA3+35304728..35305240hypothetical protein
LOC_Os03g62450Os.10827.1.S1_x_at10/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62450Os.46055.2.S1_x_at6/113+35305901..35309188transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.7.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.1.S1_s_at8/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.2.S1_x_at4/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62460OsAffx.25936.5.S1_x_at1/113+35312829..35315867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g62470OsAffx.25789.1.S1_at1/113+35316963..35317358No apical meristem protein

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Gene Ontology Classification
GO idTypeName
GO:0009395biological_processphospholipid catabolism
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0012501biological_processprogrammed cell death
GO:0005886cellular_componentplasma membrane
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52881.1.S1_at--138--7771Chr03:35290247..35290271 (25 bp)
GGTGACAGCATGTCCCAGACGAGCT
LOC_Os03g62410
Os.52881.1.S1_at--1048--3371Chr03:35290232..35290256 (25 bp)
CAGACGAGCTTATGCAATGACAACT
LOC_Os03g62410
Os.52881.1.S1_at--166--4811Chr03:35290081..35290105 (25 bp)
GCTCGGCACAGAAGCTCCGGAGATT
LOC_Os03g62410
Os.52881.1.S1_at--422--3951Chr03:35290064..35290088 (25 bp)
CGGAGATTCATGATCTATGTGCACT
LOC_Os03g62410
Os.52881.1.S1_at--848--5771Chr03:35290019..35290043 (25 bp)
GACGAGTACGTCATCATCGGATCGG
LOC_Os03g62410
Os.52881.1.S1_at--933--4391Chr03:35289930..35289954 (25 bp)
GCCACACTACAAGTGGTCTGCTGAT
LOC_Os03g62410
Os.52881.1.S1_at--692--8571Chr03:35289917..35289941 (25 bp)
TGGTCTGCTGATCACGGCCAAGGCC
LOC_Os03g62410
Os.52881.1.S1_at--441--2951Chr03:35289901..35289922 (22 bp)
AAGGCCCTCCTCGTGGACAGGTGTA
LOC_Os03g62410
Os.52881.1.S1_at--242--5091Chr03:35289294..35289318 (25 bp)
GCACCTGATGTGTTACCCGTTGAAG
LOC_Os03g62410
Os.52881.1.S1_at--734--9672Chr04:35051867..35051889 (22 bp)
TCACCACCTAGTACCTGTACCATAT
NONE
Os.52881.1.S1_at--453--9971Chr03:35289158..35289182 (25 bp)
TACCTGTACCATATCCCGCGTGAAT
LOC_Os03g62410
Target Sequence 
GGTGACAGCATGTCCCAGACGAGCTTATGCAATGACAACTCCACTCTGCGCTCGGCACAGAAGCTCCGGAGATTCATGAT
CTATGTGCACTCGAAAGGGATGGTGGTGGACGACGAGTACGTCATCATCGGATCGGCCAACATCAACCAGAGGTCCATGG
AAGGCTGCAGGGACACCGAGATCGCCATGGGCGCCTACCAGCCACACTACAAGTGGTCTGCTGATCACGGCCAAGGCCCT
CCTCGTGGACAGGTGTACGGGTACAGGATGTCGCTGTGGGCGGAGCACCTTGGGGCGGTGGAGGAGTGCTTCGGGCGGCC
GGAGACGGGGGAGTGCGTGAGGCGGGTGAGGGAGATGGCGGAGGAGAACTGGAGGGCGTACGTGTCGCCGGAGATGGAGG
AGACGAAGGGGCACCTGATGTGTTACCCGTTGAAGGTGGACAAGGACGGCCGCGTCCGCTCTCTCCCCGGCCACGACTGC
TTCCCCGACGTCGGCGGCAAGGTCCTCGGCACTCAAACCTCGCTCCCCAATGCCCTCACCACCTAGTACCTGTACCATAT
CCCGCGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis