Browse Element(s) Details


Os.52889.1.S1_at

Description gb:AK069741.1
DB_XREF= gi:32979765
TID=Os.52889.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026O22, full insert sequence.
FL= gb:AK069741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2373011/11Thaumatin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23660Os.10497.1.S1_s_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_x_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_s_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.51813.1.S1_at1/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23670OsAffx.5416.1.S1_at11/117+13368122..13368470hypothetical protein
LOC_Os07g23670OsAffx.5416.1.S1_x_at10/117+13368122..13368470hypothetical protein
LOC_Os07g23680NANA7+13370115..13370972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23690OsAffx.16383.1.S1_at11/117+13371611..13372025late embryogenesis abundant protein, putative
LOC_Os07g23700Os.54774.1.S1_x_at3/117+13374342..13378095retrotransposon, putative, centromere-specific
LOC_Os07g23700Os.54774.1.S1_at2/117+13374342..13378095retrotransposon, putative, centromere-specific
LOC_Os07g23710Os.9017.1.S1_x_at3/117+13381137..13382436Cytochrome P450 family protein
LOC_Os07g23720Os.51151.1.S1_at11/117+13382752..13384349K+ channel tetramerisation domain containing protein, expressed
LOC_Os07g23730Os.52889.1.S1_at11/117+13387132..13390394Thaumatin family protein, expressed
LOC_Os07g23740OsAffx.28558.1.S1_at11/117+13398473..13400871hypothetical protein
LOC_Os07g23750Os.27313.1.A1_at11/117+13403550..13410326Sterol 3-beta-glucosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52889.1.S1_at--43--5751Chr07:13389890..13389914 (25 bp)
GACGGCGTGCCCTGCGGACATCAAC
LOC_Os07g23730
Os.52889.1.S1_at--1092--2851Chr07:13390056..13390080 (25 bp)
AAGTGCGCTCCGAGCGAGTACTCGA
LOC_Os07g23730
Os.52889.1.S1_at--984--1171Chr07:13390072..13390096 (25 bp)
AGTACTCGAGGCTGTTCAAGGCGCA
LOC_Os07g23730
Os.52889.1.S1_at--685--1551Chr07:13390113..13390137 (25 bp)
AGCTACGCGTTCGACGACCGGAGCA
LOC_Os07g23730
Os.52889.1.S1_at--1141--3671Chr07:13390205..13390229 (25 bp)
CTAACTAATTTAGCAGCCTGCACTG
LOC_Os07g23730
Os.52889.1.S1_at--350--9051Chr07:13390228..13390252 (25 bp)
TGCAGGCCGGCGATCGATCACTCAA
LOC_Os07g23730
Os.52889.1.S1_at--671--511Chr07:13390240..13390264 (25 bp)
ATCGATCACTCAACCGATTGATTAG
LOC_Os07g23730
Os.52889.1.S1_at--772--9691Chr07:13390249..13390273 (25 bp)
TCAACCGATTGATTAGTACTGGAAG
LOC_Os07g23730
Os.52889.1.S1_at--631--5751Chr07:13390293..13390317 (25 bp)
GACGGTGTAGTCATGACGTATACAT
LOC_Os07g23730
Os.52889.1.S1_at--856--331Chr07:13390312..13390336 (25 bp)
ATACATGTATGTTTCGGAGCATCTC
LOC_Os07g23730
Os.52889.1.S1_at--766--8071Chr07:13390327..13390351 (25 bp)
GGAGCATCTCTCAAGTTTCGATCAT
LOC_Os07g23730
Target Sequence 
GACGGCGTGCCCTGCGGACATCAACCGCGTGTGCCCGAGCGAGCTGGCGGTGCGAGCGGCAGATCGCGGCGGTGCGGCGG
CGGCGGCGGTGGTGGCGTGCAAGAGCGCGTGCCTGGCGTTCGGGACGGACGAGCAGTGCTGCCGCGGGCGGTTCGCGTCG
CCGGACAAGTGCGCTCCGAGCGAGTACTCGAGGCTGTTCAAGGCGCAGTGCCCGCAGGCGTACAGCTACGCGTTCGACGA
CCGGAGCAGCACCTTCACCTGCGCCAACGCCACCGGCTACCGCATCACCTTTTGCCCCGCCGCCGCCGCCAAAAACTAAC
TAATTTAGCAGCCTGCACTGCAGGCCGGCGATCGATCACTCAACCGATTGATTAGTACTGGAAGGAACTTGAATTCTTAG
AAAGACGGTGTAGTCATGACGTATACATGTATGTTTCGGAGCATCTCTCAAGTTTCGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis