Browse Element(s) Details


Os.51813.1.S1_at

Description gb:AK063821.1
DB_XREF= gi:32973839
TID=Os.51813.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-A03, full insert sequence.
FL= gb:AK070410.1 gb:AK063821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g236601/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23600OsAffx.5415.1.S1_at11/117+13340955..13341623Root cap family protein
LOC_Os07g23610NANA7+13345750..13347138transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23620Os.46306.1.S1_x_at6/117+13347999..13348847transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23630Os.45976.1.S1_x_at2/117+13350219..13351802transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23630Os.45976.1.S1_at2/117+13350219..13351802transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23640Os.10497.1.S1_s_at11/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640Os.54579.1.S1_s_at8/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640Os.54579.1.S1_x_at3/117+13352541..13353597transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23649NANA7+13357371..13357521NA
LOC_Os07g23660Os.10497.1.S1_s_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_x_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.54579.1.S1_s_at11/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660Os.51813.1.S1_at1/117+13364722..13365809transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23670OsAffx.5416.1.S1_at11/117+13368122..13368470hypothetical protein
LOC_Os07g23670OsAffx.5416.1.S1_x_at10/117+13368122..13368470hypothetical protein
LOC_Os07g23680NANA7+13370115..13370972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23690OsAffx.16383.1.S1_at11/117+13371611..13372025late embryogenesis abundant protein, putative
LOC_Os07g23700Os.54774.1.S1_x_at3/117+13374342..13378095retrotransposon, putative, centromere-specific
LOC_Os07g23700Os.54774.1.S1_at2/117+13374342..13378095retrotransposon, putative, centromere-specific
LOC_Os07g23710Os.9017.1.S1_x_at3/117+13381137..13382436Cytochrome P450 family protein
LOC_Os07g23720Os.51151.1.S1_at11/117+13382752..13384349K+ channel tetramerisation domain containing protein, expressed
LOC_Os07g23730Os.52889.1.S1_at11/117+13387132..13390394Thaumatin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51813.1.S1_at--977--6251Chr05:7711412..7711436 (25 bp)
GATGGGATCTTGGTCCCTGGAGCCA
NONE
Os.51813.1.S1_at--809--9651Chr05:7711502..7711526 (25 bp)
TCAGAATCCCATCGATCTGCTTTTT
NONE
Os.51813.1.S1_at--204--5211Chr08:12294001..12294025 (25 bp)
GAATTGTGCTCGATTTGCTAGTGGC
NONE
Os.51813.1.S1_at--971--6931Chr07:13365627..13365659 (24 bp)
GTAGTGTGTCATCTATGTGTTTTCT
LOC_Os07g23660
Os.51813.1.S1_at--1108--3671NONE
CTTTGACTCATTGATCTTGTACCGA
NONE
Os.51813.1.S1_at--368--6411NONE
GATCTTGTACCGATTACTTGTCATA
NONE
Os.51813.1.S1_at--1083--3611NONE
CTTGTCATATTTTGGCTGTTAGAAC
NONE
Os.51813.1.S1_at--1105--8311NONE
GGCTGTTAGAACTTCTGTTACGGTT
NONE
Os.51813.1.S1_at--1070--7531Chr02:15448121..15448140 (20 bp)
TGTTACGGTTAGTTCGGTCTATGGC
NONE
Os.51813.1.S1_at--795--8411NONE
GGCCGAGACCAAAGACCGAAGTACT
NONE
Os.51813.1.S1_at--500--1791NONE
ACCGATCGGTCTTGATATTCTAAAG
NONE
Target Sequence 
GATGGGATCTTGGTCCCTGGAGCCATATGGAAAAAGTGATAGCAGAGATCGATGGGGAGTATCAATTTGCTTTTTCTTTT
CTTTTTCTTCAGAATCCCATCGATCTGCTTTTTTTTTCTTTTTCTTTAGAATTGTGCTCGATTTGCTAGTGGCATCAAAT
TGTAGTGTGTCATCTATGTGTTTTCTTTGACTCATTGATCTTGTACCGATTACTTGTCATATTTTGGCTGTTAGAACTTC
TGTTACGGTTAGTTCGGTCTATGGCCGAGACCAAAGACCGAAGTACTCGGTCTTGAGTTTTTTTAAGACCGATCGGTCTT
GATATTCTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis