Browse Element(s) Details

Os.54579.1.S1_s_at

Description

gb:AK105945.1
DB_XREF= gi:32991154
TID=Os.54579.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C04, full insert sequence.
FL= gb:AK105945.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g23660	11/11	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640	8/11	transposon protein, putative, CACTA, En/Spm sub-class, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g23600	OsAffx.5415.1.S1_at	11/11	7	+	13340955..13341623	Root cap family protein
LOC_Os07g23610	NA	NA	7	+	13345750..13347138	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23620	Os.46306.1.S1_x_at	6/11	7	+	13347999..13348847	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23630	Os.45976.1.S1_x_at	2/11	7	+	13350219..13351802	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23630	Os.45976.1.S1_at	2/11	7	+	13350219..13351802	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23640	Os.10497.1.S1_s_at	11/11	7	+	13352541..13353597	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640	Os.54579.1.S1_s_at	8/11	7	+	13352541..13353597	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23640	Os.54579.1.S1_x_at	3/11	7	+	13352541..13353597	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23649	NA	NA	7	+	13357371..13357521	NA
LOC_Os07g23660	Os.10497.1.S1_s_at	11/11	7	+	13364722..13365809	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660	Os.54579.1.S1_at	11/11	7	+	13364722..13365809	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660	Os.54579.1.S1_x_at	11/11	7	+	13364722..13365809	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660	Os.54579.1.S1_s_at	11/11	7	+	13364722..13365809	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23660	Os.51813.1.S1_at	1/11	7	+	13364722..13365809	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g23670	OsAffx.5416.1.S1_at	11/11	7	+	13368122..13368470	hypothetical protein
LOC_Os07g23670	OsAffx.5416.1.S1_x_at	10/11	7	+	13368122..13368470	hypothetical protein
LOC_Os07g23680	NA	NA	7	+	13370115..13370972	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23690	OsAffx.16383.1.S1_at	11/11	7	+	13371611..13372025	late embryogenesis abundant protein, putative
LOC_Os07g23700	Os.54774.1.S1_x_at	3/11	7	+	13374342..13378095	retrotransposon, putative, centromere-specific
LOC_Os07g23700	Os.54774.1.S1_at	2/11	7	+	13374342..13378095	retrotransposon, putative, centromere-specific
LOC_Os07g23710	Os.9017.1.S1_x_at	3/11	7	+	13381137..13382436	Cytochrome P450 family protein
LOC_Os07g23720	Os.51151.1.S1_at	11/11	7	+	13382752..13384349	K+ channel tetramerisation domain containing protein, expressed
LOC_Os07g23730	Os.52889.1.S1_at	11/11	7	+	13387132..13390394	Thaumatin family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54579.1.S1_s_at--824--317	2	Chr07:13365514..13365538 (25 bp)	AATTGTGCCCGGGAACTGAGTAGAC	LOC_Os07g23660
Os.54579.1.S1_s_at--603--1081	2	Chr07:13365516..13365540 (25 bp)	TTGTGCCCGGGAACTGAGTAGACTT	LOC_Os07g23660
Os.54579.1.S1_s_at--982--451	2	Chr07:13365520..13365544 (25 bp)	GCCCGGGAACTGAGTAGACTTGGTT	LOC_Os07g23660
Os.54579.1.S1_s_at--77--257	1	Chr07:13365527..13365551 (25 bp)	AACTGAGTAGACTTGGTTGTTTGCT	LOC_Os07g23660
Os.54579.1.S1_s_at--825--139	1	Chr07:13365535..13365559 (25 bp)	AGACTTGGTTGTTTGCTACGTATGA	LOC_Os07g23660
Os.54579.1.S1_s_at--960--567	1	Chr07:13365536..13365560 (25 bp)	GACTTGGTTGTTTGCTACGTATGAT	LOC_Os07g23660
Os.54579.1.S1_s_at--530--1041	2	Chr07:13365570..13365594 (25 bp)	TTTTGGTATGTACTATTGCTCTAGT	LOC_Os07g23660
Os.54579.1.S1_s_at--523--859	2	Chr07:13365573..13365597 (25 bp)	TGGTATGTACTATTGCTCTAGTGAC	LOC_Os07g23660
Os.54579.1.S1_s_at--625--891	2	Chr07:13365675..13365699 (25 bp)	TGAGCAGGCGTGCTTCTTATAATAA	LOC_Os07g23660
Os.54579.1.S1_s_at--792--153	2	Chr07:13365677..13365701 (25 bp)	AGCAGGCGTGCTTCTTATAATAAAG	LOC_Os07g23660
Os.54579.1.S1_s_at--1124--835	2	Chr07:13365681..13365705 (25 bp)	GGCGTGCTTCTTATAATAAAGCATA	LOC_Os07g23660

Target Sequence

AATTGTGCCCGGGAACTGAGTAGACTTGGTTGTTTGCTACGTATGATCCCGCATACTTTTGGTATGTACTATTGCTCTAG
TGACTATTTGTGTGTTTTTCGTGTGTTGTTCACTAGTGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCCGTTGCAT
ATGAGCAGGCGTGCTTCTTATAATAAAGCATA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis