Browse Element(s) Details


Os.52913.1.A1_at

Description gb:AK069869.1
DB_XREF= gi:32979893
TID=Os.52913.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038A16, full insert sequence.
FL= gb:AK069869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4345011/11MYB-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43430Os.54593.1.S1_at11/118+27340904..27342199pepper esterase, putative, expressed
LOC_Os08g43440Os.5369.1.S1_at11/118+27346219..27348261Cytochrome P450 family protein, expressed
LOC_Os08g43450Os.52913.1.A1_at11/118+27353542..27355955MYB-like protein 2, putative, expressed
LOC_Os08g43460OsAffx.17496.1.S1_at11/118+27359553..27361658hypothetical protein
LOC_Os08g43470Os.5563.1.S1_at11/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43470OsAffx.30150.5.S1_s_at1/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43480Os.7377.1.S1_at11/118+27369446..27372129Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43490OsAffx.17497.1.S1_s_at11/118+27372890..27375658DnaJ domain containing protein, expressed
LOC_Os08g43500Os.53131.1.S1_at11/118+27378353..27380711Armadillo/beta-catenin-like repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52913.1.A1_at--721--7111Chr08:27354117..27354141 (25 bp)
GTCAGTGCCCACAGACTCGATGGAG
LOC_Os08g43450
Os.52913.1.A1_at--234--8171Chr08:27354082..27354106 (25 bp)
GGAACACCAGCAGTCATGGCCTGGA
LOC_Os08g43450
Os.52913.1.A1_at--573--871Chr08:27354067..27354091 (25 bp)
ATGGCCTGGACCCATTGGTGAACTG
LOC_Os08g43450
Os.52913.1.A1_at--376--1371Chr08:27354030..27354054 (25 bp)
AGAGCTTCCAGCTGACGAGCCATGG
LOC_Os08g43450
Os.52913.1.A1_at--753--1091Chr08:27353972..27353996 (25 bp)
AGTGGCATCGTTAAGCAGTCAGCAT
LOC_Os08g43450
Os.52913.1.A1_at--1105--5991Chr08:27353783..27353807 (25 bp)
GAGAGCAAGGTGCACTGTGTCCCAA
LOC_Os08g43450
Os.52913.1.A1_at--586--6291Chr08:27353752..27353776 (25 bp)
GATGATAACAAGACCAGTTCTCCCA
LOC_Os08g43450
Os.52913.1.A1_at--552--1211Chr08:27353737..27353761 (25 bp)
AGTTCTCCCAGGTGCCTTGACAGAC
LOC_Os08g43450
Os.52913.1.A1_at--159--5231Chr08:27353685..27353709 (25 bp)
GAATAGTGATGTTCCACCCTTAAAA
LOC_Os08g43450
Os.52913.1.A1_at--728--2611Chr08:27353600..27353624 (25 bp)
AACCCTTATAGACACGTTTGCATGT
LOC_Os08g43450
Os.52913.1.A1_at--834--251Chr08:27353555..27353579 (25 bp)
ATATGAGAGGTCATCTCCATTCTCC
LOC_Os08g43450
Target Sequence 
GTCAGTGCCCACAGACTCGATGGAGCAGTCAAGCAGGAACACCAGCAGTCATGGCCTGGACCCATTGGTGAACTGGCTGT
TGGAGGCAGAGCTTCCAGCTGACGAGCCATGGCTAAATTTTACTAGCAGCAATGAAGATGACTTCAGTGGCATCGTTAAG
CAGTCAGCATGGGATGGAAGCACNACAGACTGGCTGCTTGACTACCAAGACNTTCAGCATGGACGATTCGAGCTTGATTG
ATGGTGCAAGGGTTCAGAATTCAGATGGATTGNACTTTTAGACTGAAGGGGCATACAAATTGTGCATGGCTGGTAGGTGC
AGAAGATTGTGAAAAGAGAGCAAGGTGCACTGTGTCCCAAGCTGTGGATGATAACAAGACCAGTTCTCCCAGGTGCCTTG
ACAGACACAAGCACAAGATATATTCAGAACATAGAATAGTGATGTTCCACCCTTAAAACCAAGGNCTTTGTGTTTATAGA
ACCTATANTTCTCATAGATGAAAGGTTGTAGAACTAGAAACCCTTATAGACACGTTTGCATGTATACANGCTTCTGTTCA
GAAATATGAGAGGTCATCTCCATTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52913.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis