Browse Element(s) Details


Os.52926.1.S1_at

Description gb:AK069961.1
DB_XREF= gi:32979985
TID=Os.52926.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52926 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039M23, full insert sequence.
FL= gb:AK069961.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g273601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27330Os.54017.1.S1_at11/117+15897737..15900452No apical meristem protein, expressed
LOC_Os07g27340Os.54017.1.S1_at4/117+15905192..15907105No apical meristem protein
LOC_Os07g27350Os.53672.1.A1_at11/117+15911178..15916205expressed protein
LOC_Os07g27360Os.16137.1.S1_s_at11/117+15918307..15921175expressed protein
LOC_Os07g27360Os.52926.1.S1_at1/117+15918307..15921175expressed protein
LOC_Os07g27370OsAffx.16439.1.S1_at11/117+15926951..15929796NB-ARC domain containing protein, expressed
LOC_Os07g27380OsAffx.16440.1.S1_at10/117+15933164..15933842hypothetical protein
LOC_Os07g27390Os.32835.1.S1_x_at11/117+15936423..15939365expressed protein
LOC_Os07g27390Os.32823.1.S1_x_at2/117+15936423..15939365expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52926.1.S1_at--750--2331Chr07:15919543..15919567 (25 bp)
AAAGATTTCCCTTTTGGCATGATCT
NONE
Os.52926.1.S1_at--537--10871Chr07:15919530..15919554 (25 bp)
TTGGCATGATCTTCCTTTTGAGAAA
NONE
Os.52926.1.S1_at--426--10651Chr07:15919501..15919525 (25 bp)
TTCCCTCTAGTGTTTCTTCTGGTTA
NONE
Os.52926.1.S1_at--223--5591Chr07:15919364..15919388 (25 bp)
GAAATGCAAGACACTGATCATCCAA
NONE
Os.52926.1.S1_at--126--10492Chr07:15918712..15918735 (24 bp)
TTAACACGCATCCAAAACTTTTCTA
LOC_Os07g27360
Os.52926.1.S1_at--67--10451Chr07:15919234..15919258 (25 bp)
TTAATCCGTTAGCTTGTACCCTCAA
NONE
Os.52926.1.S1_at--662--3592Chr11:22960487..22960696 (25 bp)
CATTCAGTTATTCAGCCATTCAGCA
NONE
Os.52926.1.S1_at--361--2131Chr07:15919162..15919186 (25 bp)
ACAGGAGAATGCACAGCTTGGTATT
NONE
Os.52926.1.S1_at--1110--8031Chr07:15919094..15919118 (25 bp)
GGAGATAACTGCTATTTAACAACCT
NONE
Os.52926.1.S1_at--880--751Chr07:15919069..15919093 (25 bp)
ATGTAAGGCATATTCTATTTGGCAG
NONE
Os.52926.1.S1_at--499--8491Chr07:15919050..15919074 (25 bp)
TGGCAGAAATTTTTCACGTTTTCCT
NONE
Target Sequence 
AAAGATTTCCCTTTTGGCATGATCTTCCTTTTGAGAAATTATTTCCCTCTAGTGTTTCTTCTGGTTATTCCTAAAACATA
AATTAGATAGCTTTTCAGCACAATACCAAAGTAAATTAGAGTGGATAACTCATTAAAAAATACCTTAAAAACAAGAATGA
ACTAGTAGTGAAGAATATAGAAATGCAAGACACTGATCATCCAATAGAATTTCAAGGAATGGAAAGATGGATTAACACGC
ATCCAAAACTTTTCTATATATGAATTTCTTATTATGTTGTTTTAAATCTATTTTCTAACTTCATAATATTTAATCCGTTA
GCTTGTACCCTCAAATAATCATCACAAATCATTCAGTTATTCAGCCATTCAGCACAGAAGAACAGGAGAATGCACAGCTT
GGTATTTAGCACTATGAAATATATTGATTAATAATCAATAGTTTTAGTTGGAGATAACTGCTATTTAACAACCTATGTAA
GGCATATTCTATTTGGCAGAAATTTTTCACGTTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis