Browse Element(s) Details


Os.52929.1.S1_x_at

Description gb:AK069973.1
DB_XREF= gi:32979997
TID=Os.52929.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035J19, full insert sequence.
FL= gb:AK069973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g513708/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51320Os.41896.1.S1_x_at9/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51320Os.41896.1.S1_at8/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51330Os.45952.1.S1_at11/111+29848452..29849826expressed protein
LOC_Os01g51340NANA1+29852028..29853377Zinc knuckle family protein
LOC_Os01g51360Os.19771.1.S1_at11/111+29856574..29859612Lipase family protein, expressed
LOC_Os01g51370Os.52929.1.S1_x_at8/111+29861811..29862986expressed protein
LOC_Os01g51380Os.1592.1.S1_at11/111+29863554..29869256Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os01g51390Os.4124.1.S1_a_at11/111+29871535..29875363Insulinase containing protein, expressed
LOC_Os01g51400Os.31634.1.S1_at11/111+29878513..29880843Leucine Rich Repeat family protein, expressed
LOC_Os01g51410Os.26642.1.S1_a_at11/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g51410OsAffx.23425.1.S1_at1/111+29887218..29893773Glycine dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52929.1.S1_x_at--140--7491Chr01:29862591..29862615 (25 bp)
GTGGGCACCTAGCAGATGACTCCAT
LOC_Os01g51370
Os.52929.1.S1_x_at--861--8371Chr01:29862240..29862264 (25 bp)
GGCGCAAGTTGATCCAATTTCCATC
LOC_Os01g51370
Os.52929.1.S1_x_at--109--3131Chr01:29862225..29862249 (25 bp)
AATTTCCATCTGCATCTGGTCCTTG
LOC_Os01g51370
Os.52929.1.S1_x_at--302--8611Chr01:29862131..29862233 (25 bp)
TGGTCCTTGGTCTCTGATCAGTTAT
LOC_Os01g51370
Os.52929.1.S1_x_at--689--10751Chr01:29862090..29862114 (25 bp)
TTGATTTTCCAAGTTTCGATACCGG
LOC_Os01g51370
Os.52929.1.S1_x_at--557--8151Chr01:29862067..29862091 (25 bp)
GGACAATCTTCCTTGCTATGACAAC
LOC_Os01g51370
Os.52929.1.S1_x_at--603--8751NONE
TGTACATCTATGTTCTCCCGCTGTA
NONE
Os.52929.1.S1_x_at--426--9311NONE
TCCCGCTGTACTTTAGTTCGTTGTT
NONE
Os.52929.1.S1_x_at--409--2951Chr01:29861962..29861986 (25 bp)
AATAGACCCGACTCTCTGTAAAGTT
LOC_Os01g51370
Os.52929.1.S1_x_at--571--5691NONE
GACTTCCTGTTTTTAGGGCATTCAG
NONE
Os.52929.1.S1_x_at--465--7771Chr01:29861845..29861869 (25 bp)
GGTGACAATATCTTGTGGCCATCAA
LOC_Os01g51370
Target Sequence 
GTGGGCACCTAGCAGATGACTCCATCCGCGCTAGCGGTGACCTCTCATCTCCTATCGGTTCAGCGCCTAACGGTCGCTGC
CTCCTCTTCCACAGCTCGCTGCCACACTATGATCAGCAAAGGCGCAAGTTGATCCAATTTCCATCTGCATCTGGTCCTTG
GTCTCTGATCAGTTATCAATTTGCAAGAGTGCTTGATTTTCCAAGTTTCGATACCGGACAATCTTCCTTGCTATGACAAC
TAAGATGTTCTTTCTGTACATCTATGTTCTCCCGCTGTACTTTAGTTCGTTGTTAGTTGAGTTAGATTTAGTGTGAAGCA
AATAGACCCGACTCTCTGTAAAGTTAGTATTGTATATGACTTCCTGTTTTTAGGGCATTCAGCAAGTGCTTATGGTTAAG
AACTACACTACATTACAAAGTTGCCAAGAAAATGCAAGGTGACAATATCTTGTGGCCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52929.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis