Browse Element(s) Details


Os.52932.1.S1_at

Description gb:AK069981.1
DB_XREF= gi:32980005
TID=Os.52932.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035C15, full insert sequence.
FL= gb:AK069981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2916011/11ankyrin-like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29130Os.57050.1.S1_at11/112+17239164..17249009ankyrin-like protein, putative, expressed
LOC_Os02g29140OsAffx.2784.1.S1_s_at11/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_x_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29150Os.8269.1.A1_at11/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29150OsAffx.24492.1.S1_at1/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29160Os.52932.1.S1_at11/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2785.1.S1_at6/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2524.2.S1_at1/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29170OsAffx.31801.4.S1_at10/112+17288054..17290035hypothetical protein
LOC_Os02g29180NANA2+17294959..17295477hypothetical protein
LOC_Os02g29190OsAffx.2786.1.S1_at11/112+17303250..17310286TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009860biological_processpollen tube growth
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0005515molecular_functionprotein binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52932.1.S1_at--1129--2431Chr02:17272829..17272853 (25 bp)
AAAAGGCGTGTGATGCTCTCCTCGA
LOC_Os02g29160
Os.52932.1.S1_at--1155--6331Chr02:17272818..17272842 (25 bp)
GATGCTCTCCTCGATGGTTTCAAAA
LOC_Os02g29160
Os.52932.1.S1_at--877--6251Chr02:17272504..17272528 (25 bp)
GATGGTGCTAAGCTGACAACCTGAA
LOC_Os02g29160
Os.52932.1.S1_at--375--8991Chr02:17272479..17272503 (25 bp)
TGAAGCGTCTATACTCGAGAGCCAC
LOC_Os02g29160
Os.52932.1.S1_at--367--7251Chr02:17271815..17271839 (25 bp)
GTCCCTGTGTGCTACGGCGAGCAAA
LOC_Os02g29160
Os.52932.1.S1_at--632--2291Chr02:17271793..17271817 (25 bp)
AAATGTGTGCCGAACTCTCAGCATG
LOC_Os02g29160
Os.52932.1.S1_at--1012--1971Chr02:17271780..17271804 (25 bp)
ACTCTCAGCATGTCATATTCCTGCA
LOC_Os02g29160
Os.52932.1.S1_at--101--3371Chr02:17271757..17271781 (25 bp)
CACCTGCAGTTGTTGCGTGTTCATA
LOC_Os02g29160
Os.52932.1.S1_at--217--7431Chr02:17271741..17271765 (25 bp)
GTGTTCATAACAGCTGGATCGTGGA
LOC_Os02g29160
Os.52932.1.S1_at--651--8591Chr02:17271635..17271659 (25 bp)
TGGTCCGGCCGGATGAAATCTATGC
LOC_Os02g29160
Os.52932.1.S1_at--234--3073Chr06:16965808..16965832 (25 bp)
AATCTATGCCGTTGATTGCCGATTC
NONE
Target Sequence 
AAAAGGCGTGTGATGCTCTCCTCGATGGTTTCAAAATGGACCCAGGGAACTCTGAGATTGAGAACGCTCTAAGGGAGGCG
ATGGAGTCCTTGAAGATATCTGATGGTGCTAAGCTGACAACCTGAATGAAGCGTCTATACTCGAGAGCCACAGCCTGCAG
GCTGTTGCGTCGGCGTGCGGGGACCGACGGCCACCGAGCTAGACCTCTCCGTCCCTGTGTGCTACGGCGAGCAAATGTGT
GCCGAACTCTCAGCATGTCATATTCCTGCACCTGCAGTTGTTGCGTGTTCATAACAGCTGGATCGTGGAGGTCACAAGGC
TGATCAATTTTTATCACCTTCGTTTTGTAATATACGAGACATTTGACTTTCTTTTAAGTTAACTAGGGTTTGGTCCGGCC
GGATGAAATCTATGCCGTTGATTGCCGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis