Browse Element(s) Details


Os.52966.1.S1_at

Description gb:AK070162.1
DB_XREF= gi:32980186
TID=Os.52966.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52966 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023046N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023046N14, full insert sequence.
FL= gb:AK070162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4181011/11WPP domain associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41750OsAffx.13041.2.A1_at10/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41750Os.54015.1.S1_at1/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41760Os.25093.1.A1_x_at4/1112+25839963..25841948expressed protein
LOC_Os12g41760OsAffx.20082.1.S1_at1/1112+25839963..25841948expressed protein
LOC_Os12g41770OsAffx.32143.1.S1_at11/1112+25844359..25844760hypothetical protein
LOC_Os12g41780Os.33273.1.S1_at11/1112+25849499..25852311glycosyl transferase family 17 protein, putative, expressed
LOC_Os12g41790OsAffx.32144.1.S1_at11/1112+25852605..25853637Gamma-thionins family protein
LOC_Os12g41800Os.8970.1.S1_at11/1112+25855260..25859382VTC2, putative, expressed
LOC_Os12g41810Os.52966.1.S1_at11/1112+25860719..25864435WPP domain associated protein, putative, expressed
LOC_Os12g41820Os.11924.1.S1_at10/1112+25867850..25873944DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os12g41830OsAffx.7857.1.S1_at11/1112+25879339..25881031modification methylase, HemK family protein, expressed
LOC_Os12g41840OsAffx.32145.1.S1_at11/1112+25882716..25884226preprotein translocase, SecY subunit containing protein
LOC_Os12g41850OsAffx.32146.2.S1_at10/1112+25884957..25886877expressed protein
LOC_Os12g41860Os.32984.1.S1_at11/1112+25887035..25893743class III HD-Zip protein 4, putative, expressed
LOC_Os12g41860Os.56258.1.S1_at1/1112+25887035..25893743class III HD-Zip protein 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52966.1.S1_at--760--5111Chr12:25861406..25861430 (25 bp)
GCACTTGATCATTATTCTCCTGTAT
LOC_Os12g41810
Os.52966.1.S1_at--702--9491Chr12:25861391..25861415 (25 bp)
TCTCCTGTATTGAAGCATTATCCTG
LOC_Os12g41810
Os.52966.1.S1_at--729--6031Chr12:25861124..25861148 (25 bp)
GAGATTTTTCAATACTTCAGTTACC
LOC_Os12g41810
Os.52966.1.S1_at--56--10371Chr12:25861080..25861104 (25 bp)
TTTTTTGCATTGTCTCACAGGGAAG
LOC_Os12g41810
Os.52966.1.S1_at--503--10011Chr12:25861013..25861037 (25 bp)
TAGCTAGCTACCATTGTTCCATTGA
LOC_Os12g41810
Os.52966.1.S1_at--872--6671Chr12:25860998..25861022 (25 bp)
GTTCCATTGATAGGGTTACCAACCG
LOC_Os12g41810
Os.52966.1.S1_at--33--7891Chr12:25860985..25861009 (25 bp)
GGTTACCAACCGCATCTGTTGATTT
LOC_Os12g41810
Os.52966.1.S1_at--481--411Chr12:25860950..25860974 (25 bp)
ATCAGTGTTCAGTTAGTGGTGTTGT
LOC_Os12g41810
Os.52966.1.S1_at--810--10231Chr12:25860891..25860915 (25 bp)
TATTGGTTGTAGTTTCAGGTTTCAC
LOC_Os12g41810
Os.52966.1.S1_at--342--6251Chr12:25860813..25860837 (25 bp)
GATGGTTTTGTCAGTGATCTTTTTT
LOC_Os12g41810
Os.52966.1.S1_at--1056--8031Chr12:25860743..25860767 (25 bp)
GGAGTTGTAATATCAGGTGGCTAAT
LOC_Os12g41810
Target Sequence 
GCACTTGATCATTATTCTCCTGTATTGAAGCATTATCCTGGGGTTACAGAGATTTTGAATCTGGTTCAGAAAGCATTGAA
AGGAGAAAGTATTTAGTAGGATCAGGAAAAACCTTAACACTATTCATGAAAAGGCTTGACATGGATAGAATTATGACTGA
GATTTTTCAATACTTCAGTTACCTGATTGCCGNAGGCANNATTTTTTTTGCATTGTCTCACAGGGAAGAAAGATTAAGAT
NTTAACACACAAAGGCAAAGCATAGTAAACTAGCTAGCTACCATTGTTCCATTGATAGGGTTACCAACCGCATCTGTTGA
TTTATATGATTGTATCAGTGTTCAGTTAGTGGTGTTGTGAGTACAGTAGTACAGGCTTATANGGTCTATTTGTATTGGTT
GTAGTTTCAGGTTTCACTGTGAGTAGTTTACTTGNCTGCATGCAACAAAGTGCAGCTTGNTATAGTTATAGATGGTTTTG
TCAGTGATCTTTTTTAGATGGCTTTGTAAAGATTCTTTGTGGAATNGAANGNAGTAGGTAGGAGTTGTAATATCAGGTGG
CTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis