Browse Element(s) Details


Os.52968.1.S1_at

Description gb:AK070171.1
DB_XREF= gi:32980195
TID=Os.52968.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041O20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041O20, full insert sequence.
FL= gb:AK070171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1916011/11beta-D-xylosidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19130Os.17538.1.S1_at11/1111+10888771..10893491expressed protein
LOC_Os11g19140OsAffx.18938.1.S1_at11/1111+10895761..10899895hypothetical protein
LOC_Os11g19140OsAffx.13740.1.S1_at1/1111+10895761..10899895hypothetical protein
LOC_Os11g19149Os.14771.1.S1_at4/1111+10903553..10903828NA
LOC_Os11g19149OsAffx.28888.1.S1_x_at1/1111+10903553..10903828NA
LOC_Os11g19160Os.52968.1.S1_at11/1111+10913022..10917118beta-D-xylosidase, putative, expressed
LOC_Os11g19160OsAffx.2931.1.S1_at1/1111+10913022..10917118beta-D-xylosidase, putative, expressed
LOC_Os11g19170OsAffx.31055.1.S1_at10/1111+10925903..10926280hypothetical protein
LOC_Os11g19180NANA11+10933699..10933920hypothetical protein
LOC_Os11g19190Os.26886.3.S1_x_at7/1111+10939788..10943136transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19190Os.26886.1.S1_x_at7/1111+10939788..10943136transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52968.1.S1_at--174--9651Chr11:10916544..10916568 (25 bp)
TCAGCTACTCCAAGTTCGCTTGCCG
LOC_Os11g19160
Os.52968.1.S1_at--698--9211Chr11:10916552..10916576 (25 bp)
TCCAAGTTCGCTTGCCGCATCGTCT
LOC_Os11g19160
Os.52968.1.S1_at--727--2531Chr11:10916588..10916612 (25 bp)
AACTCGTCATCCTACGGCAAGGCGG
LOC_Os11g19160
Os.52968.1.S1_at--777--4131Chr11:10916613..10916637 (25 bp)
CGCTCGCTGGCCTTAGGGCAGCAAC
LOC_Os11g19160
Os.52968.1.S1_at--706--2931Chr11:10916646..10916670 (25 bp)
AAGGCGACGCCGTCTACCGCGTCGA
LOC_Os11g19160
Os.52968.1.S1_at--1016--1491Chr11:10916751..10916775 (25 bp)
AGCACACCGTGCTGATGTTCGTCCG
LOC_Os11g19160
Os.52968.1.S1_at--909--1311Chr11:10916865..10916889 (25 bp)
AGATGGAGATCAGCCCATGCGAGCA
LOC_Os11g19160
Os.52968.1.S1_at--970--1271Chr11:10916871..10916956 (25 bp)
AGATCAGCCCATGCGAGCACTTGAG
LOC_Os11g19160
Os.52968.1.S1_at--672--8851Chr11:10916922..10916946 (25 bp)
TGATCGACAGAGGATCGCATTTCCT
LOC_Os11g19160
Os.52968.1.S1_at--661--991Chr11:10916932..10916956 (25 bp)
AGGATCGCATTTCCTCATGGTTGAG
LOC_Os11g19160
Os.52968.1.S1_at--1026--10051Chr11:10916974..10916998 (25 bp)
TAGGTTCCAGGATTGAGTTTTAGAT
LOC_Os11g19160
Target Sequence 
TCAGCTACTCCAAGTTCGCTTGCCGCATCGTCTCCGGCGCCGGCAACTCGTCATCCTACGGCAAGGCGGCGCTCGCTGGC
CTTAGGGCAGCAACCACACCAGAAGGCGACGCCGTCTACCGCGTCGACGAGATCGGCGACGACCGGTGCGAGCGGCTCGG
GTTCCCGGTCATGGTGGAGGTGCAGAACCATGGCCCCATGGATGGCAAGCACACCGTGCTGATGTTCGTCCGGTGGTCGA
GCACGGATGGCGGCCGGCCGGTGAGGCAGCTGATCGGGTTCAGGAACCAGCATCTCAAGGTAGGGGAGAAGAAGAAGTTG
AAGATGGAGATCAGCCCATGCGAGCACTTGAGCAGGGCGAGGGTGGACGGCGAGAAGGTGATCGACAGAGGATCGCATTT
CCTCATGGTTGAGGAGGATGAGTTGGAGATTAGGTTCCAGGATTGAGTTTTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis