Browse Element(s) Details


Os.52999.1.S1_at

Description gb:AK070357.1
DB_XREF= gi:32980381
TID=Os.52999.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023053N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023053N08, full insert sequence.
FL= gb:AK070357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4381011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43760Os.38172.1.S1_x_at6/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.43567.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.53217.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43770OsAffx.32181.1.S1_at11/1112+27154482..27155870F-box domain containing protein
LOC_Os12g43780Os.25475.1.S1_at11/1112+27157385..27158406expressed protein
LOC_Os12g43790NANA12+27163743..27164249bZIP transcription factor family protein, expressed
LOC_Os12g43810Os.52999.1.S1_at11/1112+27171897..27172508expressed protein
LOC_Os12g43820OsAffx.20109.1.S1_at11/1112+27175674..27176105expressed protein
LOC_Os12g43830Os.23586.1.S1_at11/1112+27176739..27179569expressed protein
LOC_Os12g43840Os.54809.1.S1_at11/1112+27179922..27185459TPR Domain containing protein, expressed
LOC_Os12g43850Os.54634.1.S1_at11/1112+27186781..27191737retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52999.1.S1_at--712--10151Chr12:27172451..27172475 (25 bp)
TATCGATCGATATGCCGATGCGCGC
LOC_Os12g43810
Os.52999.1.S1_at--510--7171Chr12:27172278..27172302 (25 bp)
GTCGAGTTCCCCACGGACGACGACG
LOC_Os12g43810
Os.52999.1.S1_at--340--7731Chr12:27172122..27172146 (25 bp)
GGTGGCTTTCGCTGTTGTGACAACA
LOC_Os12g43810
Os.52999.1.S1_at--108--5631Chr12:27172104..27172128 (25 bp)
GACAACACCACCACTGCTAATTAAT
LOC_Os12g43810
Os.52999.1.S1_at--403--9571Chr12:27172062..27172086 (25 bp)
TCTTCTTGCAGTATGCATGTTGCAA
LOC_Os12g43810
Os.52999.1.S1_at--573--4371Chr12:27172028..27172052 (25 bp)
CCAATTGTTAGTTAGTTTCTCGCTG
LOC_Os12g43810
Os.52999.1.S1_at--956--6831Chr12:27172014..27172038 (25 bp)
GTTTCTCGCTGATGAATTGTACTAT
LOC_Os12g43810
Os.52999.1.S1_at--118--5251Chr12:27171969..27171993 (25 bp)
GAATCATCCTACATATATACTCCTA
LOC_Os12g43810
Os.52999.1.S1_at--755--271Chr12:27171945..27171969 (25 bp)
ATATGTGTATCACACTCCAATGGTC
LOC_Os12g43810
Os.52999.1.S1_at--324--2971Chr12:27171927..27171951 (25 bp)
AATGGTCTTCGGTTCAATTGCTCTC
LOC_Os12g43810
Os.52999.1.S1_at--864--6751Chr12:27171916..27171940 (25 bp)
GTTCAATTGCTCTCCAGCTTAATTT
LOC_Os12g43810
Target Sequence 
TATCGATCGATATGCCGATGCGCGCCGCCACCTCCTCGCCGCGGTGCGCGTCCTTCTCCTGCAACCGCGGAGGCGCCCAC
GCCCACCTGGGCCAAAGCTGCGGCCGCCCGCTGGGCCGAGCTGCCGGGTGCCTCGCCGCCGCCTTCTTCGCGTCGCTGGA
GCGCTGCTCCTGCGTCGAGTTCCCCACGGACGACGACGACGACCACCCTCCCAGGAGCCGGGACGTCGTCGTCGTCAGCG
AGGCGGCGCCGCTGCTGCCCCGCGCCACCACGGCGGCGCCGAAGAAGAGCACGTCGACTACGACGGCCGGGAAGGGCAAG
ATCAGCAGGGGTGGCTTTCGCTGTTGTGACAACACCACCACTGCTAATTAATCAATAGTCTTCAATTCTTCTTCTTGCAG
TATGCATGTTGCAAATGAATAAACCAATTGTTAGTTAGTTTCTCGCTGATGAATTGTACTATGTCATAAGTTCATTTTGG
ATGAATCATCCTACATATATACTCCTATATGTGTATCACACTCCAATGGTCTTCGGTTCAATTGCTCTCCAGCTTAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis