Browse Element(s) Details


Os.53020.1.S1_at

Description gb:AK070489.1
DB_XREF= gi:32980513
TID=Os.53020.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050L12, full insert sequence.
FL= gb:AK070489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4213011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42040Os.28129.1.S1_at11/115+24522508..24524718Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g42060Os.28129.1.S1_at1/115+24528548..24530014Cytokinin-O-glucosyltransferase 1, putative
LOC_Os05g42070OsAffx.4594.1.S1_at11/115+24532997..24534158UDP-glucose:flavonoid-O-glucosyltransferase, putative
LOC_Os05g42080OsAffx.27281.1.S1_at10/115+24535221..24535753expressed protein
LOC_Os05g42080OsAffx.22604.1.S1_x_at2/115+24535221..24535753expressed protein
LOC_Os05g42090OsAffx.4595.1.S1_at11/115+24537573..24538328hypothetical protein
LOC_Os05g42100Os.17764.1.S1_at10/115+24540121..24541414expressed protein
LOC_Os05g42110NANA5+24543296..24543595hypothetical protein
LOC_Os05g42120Os.56954.1.S1_at10/115+24544014..24545955heat shock protein, putative, expressed
LOC_Os05g42130Os.53020.1.S1_at11/115+24547965..24549508GRAS family transcription factor containing protein, expressed
LOC_Os05g42140OsAffx.15067.1.S1_at11/115+24549853..24550554expressed protein
LOC_Os05g42150Os.16010.1.S1_at11/115+24560400..24562711Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os05g42160NANA5+24564203..24564565hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008356biological_processasymmetric cell division
GO:0009640biological_processphotomorphogenesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53020.1.S1_at--201--5011Chr05:24548964..24548988 (25 bp)
GCATGGCGGGCTGCTTCGACTTCCA
LOC_Os05g42130
Os.53020.1.S1_at--438--5691Chr05:24548981..24549005 (25 bp)
GACTTCCACTGGATCCTGCTCGACG
LOC_Os05g42130
Os.53020.1.S1_at--548--8771Chr05:24549288..24549312 (25 bp)
TGTTCACCGGCGCTTGGACGCCCAA
LOC_Os05g42130
Os.53020.1.S1_at--489--10851Chr05:24549301..24549325 (25 bp)
TTGGACGCCCAACTAGTTGAGCCTA
LOC_Os05g42130
Os.53020.1.S1_at--1049--6651Chr05:24549316..24549340 (25 bp)
GTTGAGCCTAGCTTAGCAATCTACA
LOC_Os05g42130
Os.53020.1.S1_at--100--1491Chr05:24549330..24549354 (25 bp)
AGCAATCTACAGTATACATCAAGTG
LOC_Os05g42130
Os.53020.1.S1_at--893--4891Chr05:24549361..24549385 (25 bp)
GCTTAAGCTGGTGTTAGACTGTCTA
LOC_Os05g42130
Os.53020.1.S1_at--761--5731Chr05:24549377..24549401 (25 bp)
GACTGTCTATTAGCTCAGAAGTGAC
LOC_Os05g42130
Os.53020.1.S1_at--1108--5311Chr05:24549394..24549418 (25 bp)
GAAGTGACAACGGAGAATCAACTGA
LOC_Os05g42130
Os.53020.1.S1_at--966--3051Chr05:24549409..24549433 (25 bp)
AATCAACTGAGGAGGAATTTCTGGT
LOC_Os05g42130
Os.53020.1.S1_at--841--10051Chr05:24549440..24549464 (25 bp)
TAGTGGATCGTTTTAAACTTCTACT
LOC_Os05g42130
Target Sequence 
GCATGGCGGGCTGCTTCGACTTCCACTGGATCCTGCTCGACGCGCTCGACATGTCGGCGCCCAAGGACAGCCCGCGGCGG
CTGGAGCAGGAGGCGGCCGTCGGGCGGAAGATCGAGAGCGTCATCGGCGAGGAAGACGGCGCCGAGCGCTCGGAGCCCGG
CGCGAGGCTCGCCGAGAGGATGAGCCGGAAAGGGTTCGCCGGCGTCGTGTTCNANGAGGAGGCGGCGGCGGAGGTGCGAC
GATTGCTGAGCGAGCACGCCACGGGGTGGGGCGTGAAGCGGGAAGACGACATGCTGGTGCTGACGTGGAAGGGGCACGCC
GCCGTGTTCACCGGCGCTTGGACGCCCAACTAGTTGAGCCTAGCTTAGCAATCTACAGTATACATCAAGTGATTAAAGCT
TAAGCTGGTGTTAGACTGTCTATTAGCTCAGAAGTGACAACGGAGAATCAACTGAGGAGGAATTTCTGGTTGGATTTAGT
GGATCGTTTTAAACTTCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis