Browse Element(s) Details


Os.53047.1.S1_at

Description gb:AK072889.1
DB_XREF= gi:32982912
TID=Os.53047.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149L18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149L18, full insert sequence.
FL= gb:AK072889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3249910/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32470Os.52827.1.S1_at10/1112+19568465..19573686expressed protein
LOC_Os12g32480Os.54476.1.S1_at11/1112+19580421..19583289expressed protein
LOC_Os12g32499OsAffx.31982.1.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.2.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.1.S1_at10/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.51248.1.S1_at1/1112+19583773..19594400expressed protein
LOC_Os12g32520OsAffx.19934.1.S1_at11/1112+19599586..19601787hypothetical protein
LOC_Os12g32530OsAffx.19935.1.S1_at10/1112+19604582..19605914hypothetical protein
LOC_Os12g32544Os.49130.1.S1_x_at11/1112+19614056..19621685expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53047.1.S1_at--456--5032Chr12:19591594..19591618 (25 bp)
GCAGCTTAGGCATCAATCCTCACTA
LOC_Os12g32499
Os.53047.1.S1_at--1024--2011Chr12:19591615..19591639 (25 bp)
ACTACATCCATTCCCGTGGTTGCGT
LOC_Os12g32499
Os.53047.1.S1_at--168--7911Chr12:19591632..19591656 (25 bp)
GGTTGCGTCTTTTATCGTGGACATC
LOC_Os12g32499
Os.53047.1.S1_at--293--7531Chr12:19591648..19591672 (25 bp)
GTGGACATCACAGGTTGCACCATTT
LOC_Os12g32499
Os.53047.1.S1_at--963--3071Chr12:19592913..19592934 (22 bp)
AATAGAGCTCCCATAAATGTGTAAA
LOC_Os12g32499
Os.53047.1.S1_at--839--7651NONE
GGGATACACGATTGTGCCACAGGCA
NONE
Os.53047.1.S1_at--917--8391Chr12:19594142..19594166 (25 bp)
GGCCCAGTTCATCGAGATTGTGGCA
LOC_Os12g32499
Os.53047.1.S1_at--573--5171Chr12:19594164..19594188 (25 bp)
GCAATGGTGGTACTCCAAGCCAAAA
LOC_Os12g32499
Os.53047.1.S1_at--497--3111Chr12:19594199..19594223 (25 bp)
AATATTGGAGGCCTCAGGTCCGAAG
LOC_Os12g32499
Os.53047.1.S1_at--1136--5171Chr12:19594345..19594369 (25 bp)
GCAAGTGGGTTGTATTTTCCTGTTC
LOC_Os12g32499
Os.53047.1.S1_at--682--6871Chr12:19594356..19594380 (25 bp)
GTATTTTCCTGTTCCCAGAATCTAA
LOC_Os12g32499
Target Sequence 
GCAGCTTAGGCATCAATCCTCACTACATCCATTCCCGTGGTTGCGTCTTTTATCGTGGACATCACAGGTTGCACCATTTC
TTAAGAAGAATGATACTTTTGTAGCAGCACTAAAGAAGGAACTGTCTGAACACATTGCTGATGTGCATGTTCAAAACGAT
TTTCTCGATGGCATGTTCACTTTCTGTGGTGCTACAATGGCACCTGCACCTCTAAATAGAGCTCCCATAAATGTGTAAAT
GATGGGATACACGATTGTGCCACAGGCAAAGGAAAGAGATTGAGAGGTTTTGAGAAGGGGCCCAGTTCATCGAGATTGTG
GCAATGGTGGTACTCCAAGCCAAAAAAAGAAAAAAAATATTGGAGGCCTCAGGTCCGAAGAATTGAAGGATGTCAGAATG
TGAGAAGTGTGAAGCAGATAAGGGTTTTTTCTTCTTTTTTTTTTCTCTTTTGGTGTGTAATCTGTTGAGGATGGTGCCTG
ATGATAGAGTAGTTCAAGCTTTGCAAGTGGGTTGTATTTTCCTGTTCCCAGAATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis