Browse Element(s) Details


Os.53047.2.S1_at

Description gb:AK070590.1
DB_XREF= gi:32980614
TID=Os.53047.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149L18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057J16, full insert sequence.
FL= gb:AK070590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3249911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32470Os.52827.1.S1_at10/1112+19568465..19573686expressed protein
LOC_Os12g32480Os.54476.1.S1_at11/1112+19580421..19583289expressed protein
LOC_Os12g32499OsAffx.31982.1.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.2.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.1.S1_at10/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.51248.1.S1_at1/1112+19583773..19594400expressed protein
LOC_Os12g32520OsAffx.19934.1.S1_at11/1112+19599586..19601787hypothetical protein
LOC_Os12g32530OsAffx.19935.1.S1_at10/1112+19604582..19605914hypothetical protein
LOC_Os12g32544Os.49130.1.S1_x_at11/1112+19614056..19621685expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53047.2.S1_at--235--10811Chr12:19588269..19588293 (25 bp)
TTGTCTTCAGGAGGTAATCAGTTCT
LOC_Os12g32499
Os.53047.2.S1_at--946--2231Chr12:19588296..19588320 (25 bp)
ACAATTGTCCTTTGTTTTCTTCAGG
LOC_Os12g32499
Os.53047.2.S1_at--469--951Chr12:19588353..19588377 (25 bp)
AGGACTAACACATCTACAACCCTTT
LOC_Os12g32499
Os.53047.2.S1_at--731--2812Chr12:19589716..19589737 (22 bp)
AAGATAGCTCTTTCAACGCCTCATG
LOC_Os12g32499
Os.53047.2.S1_at--834--4592Chr12:19589772..19589796 (25 bp)
GCGACCTATCCTTTTCGTTTCGATA
LOC_Os12g32499
Os.53047.2.S1_at--1122--5272Chr12:19589799..19589823 (25 bp)
GAATGATAGCTTTCAGCCTGATCCA
LOC_Os12g32499
Os.53047.2.S1_at--1056--3371Chr12:19589812..19589836 (25 bp)
CAGCCTGATCCAGATGTGTCACTAA
LOC_Os12g32499
Os.53047.2.S1_at--723--6251Chr12:19589824..19589848 (25 bp)
GATGTGTCACTAAACTAGGCGTTTT
LOC_Os12g32499
Os.53047.2.S1_at--1080--211Chr12:19589858..19589882 (25 bp)
ATTTGTGTGGGTGATGCGGATTTTA
LOC_Os12g32499
Os.53047.2.S1_at--791--6631Chr12:19589908..19589932 (25 bp)
GTTGTAAAGGCATTTCCTGCTGAAT
LOC_Os12g32499
Os.53047.2.S1_at--1146--4271Chr12:19589923..19589947 (25 bp)
CCTGCTGAATGCTTGTTTGACTATC
LOC_Os12g32499
Target Sequence 
TTGTCTTCAGGAGGTAATCAGTTCTGAACAATTGTCCTTTGTTTTCTTCAGGAAGATGTTAAAACTGGTACATAAGTAAC
GATGAGGACTAACACATCTACAACCCTTTCAAGCTACCAATGGGTAGGTCAGGATGATTTGGGAGGAGCGAGAAACCTGA
AATTATTATGTCTCTTTGATGAAATATCTGGGTTGAAATTCAATTTTCATAAGATTTAGACGTTTTGTTTCTGAAGTTCT
GTTGAGAAGCAAGATAGCTCTTTCAACGCCTCATGGACCAAATGGAAAAAGCTGATGATGAGGTAAAAGGCGACCTATCC
TTTTCGTTTCGATAAAGAATGATAGCTTTCAGCCTGATCCAGATGTGTCACTAAACTAGGCGTTTTTAATTGTGAATTTG
TGTGGGTGATGCGGATTTTAGTACAGCAAGGTAGGCTGTTGACCTGTTGTAAAGGCATTTCCTGCTGAATGCTTGTTTGA
CTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53047.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis