Browse Element(s) Details


Os.53050.1.S1_at

Description gb:AK070604.1
DB_XREF= gi:32980628
TID=Os.53050.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023059F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023059F08, full insert sequence.
FL= gb:AK070604.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3113011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31090OsAffx.17259.1.S1_s_at11/118+19073822..19075071expressed protein
LOC_Os08g31090Os.6304.1.S1_at9/118+19073822..19075071expressed protein
LOC_Os08g31100Os.48015.1.A1_x_at1/118+19078097..19078542retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g31110Os.50396.1.S1_at11/118+19082987..19084967fertility restorer homologue, putative, expressed
LOC_Os08g31120OsAffx.31487.1.S1_at11/118+19087627..19088273hypothetical protein
LOC_Os08g31130Os.53050.1.S1_at11/118+19089242..19094679Integral membrane protein DUF6 containing protein, expressed
LOC_Os08g31140OsAffx.17261.1.S1_at11/118+19111548..19112696heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os08g31140Os.8543.1.S1_at3/118+19111548..19112696heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os08g31150NANA8+19116801..19124338retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53050.1.S1_at--259--5291Chr08:19090779..19090803 (25 bp)
GTTGGAGTATTTCAAACCGCATTGG
LOC_Os08g31130
Os.53050.1.S1_at--1003--2611Chr08:19090765..19090789 (25 bp)
AACCGCATTGGTCGGAATCATATTA
LOC_Os08g31130
Os.53050.1.S1_at--354--1571Chr08:19090718..19090742 (25 bp)
AGCTAGGATGGAATCTCAACCTTGT
LOC_Os08g31130
Os.53050.1.S1_at--1137--2611Chr08:19090701..19090725 (25 bp)
AACCTTGTTACCATCGTGTACACGG
LOC_Os08g31130
Os.53050.1.S1_at--662--331Chr08:19090351..19090375 (25 bp)
ATAACTAAGCGAGGCCCAACCTATC
LOC_Os08g31130
Os.53050.1.S1_at--955--10531Chr08:19090318..19090342 (25 bp)
TTCAGTCCATTATCAGTCGTCTTCA
LOC_Os08g31130
Os.53050.1.S1_at--424--10871Chr08:19089483..19089929 (25 bp)
TTGGAAGTCTTCTAGGCACAGCATT
LOC_Os08g31130
Os.53050.1.S1_at--384--1551Chr08:19089464..19089488 (25 bp)
AGCATTGGTGATTGTCGGGCTCTAC
LOC_Os08g31130
Os.53050.1.S1_at--900--4771Chr08:19089446..19089470 (25 bp)
GCTCTACCTTTTTCTCTGGGCCAAA
LOC_Os08g31130
Os.53050.1.S1_at--1053--1191Chr08:19089393..19089417 (25 bp)
AGTATATTCTACACAAGTCCTGGTA
LOC_Os08g31130
Os.53050.1.S1_at--160--1151Chr08:19089378..19089402 (25 bp)
AGTCCTGGTAGCTAAACAACACATA
LOC_Os08g31130
Target Sequence 
GTTGGAGTATTTCAAACCGCATTGGTCGGAATCATATTAAGGAGAGACAAGAGTGCATGGGAGCTAGGATGGAATCTCAA
CCTTGTTACCATCGTGTACACGGGGGCACTTGCAACAGCCGGGAAATATATATTGAATTCATGGGCAATAACTAAGCGAG
GCCCAACCTATCCCACAATGTTCAGTCCATTATCAGTCGTCTTCACTGTTGTGTTGGATTCAGTCCTTCTAGGAAATGAT
ATTACAATTGGAAGTCTTCTAGGCACAGCATTGGTGATTGTCGGGCTCTACCTTTTTCTCTGGGCCAAAGCACGAGAAAT
ACCTAAGAAGTCAACATAGTATATTCTACACAAGTCCTGGTAGCTAAACAACACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis